AMCG00012448 (vps45,LOC106588336)


Basic Information

Item Value
gene id AMCG00012448
gene name vps45,LOC106588336
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18295215 ~ 18320973 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012448
GTCGGACTGcaattcccagcatgcaccacGCACACGGAAGTGCATCCCGCGGAAGTGCATCCGGGGCAAAAGCCGCGCCGTACAGCTGACTCGCCTCGGATGACAACAATGCCAAATCGCTGCGTCTGTCCTCAAGATAAAGCGATCTGAAGCTGCACACGGCCCCGCAGCCCCTCGTATCCACTTTGTCTTTACTTCCACGGTTGGTTGAAAGCGACACAGCCATCCAAGATGAACGTCACGCTGGCTGTCAAGCAGTACGTCTCCAAAATGATCGAGAGCAGTGGGCCGGGGATGAAGGTGCTGCTGATGGATAAAGAGACGACCAGCATTGTGAGCGTGGTCTACACGCAGTCCGAAATCCTGCAGAAGGAGGTGTACCTGTTCGAGCGCATCGACTCGCAGAACCGCGACAACATGAAGCACCTGAAGGCCATCTGTTTCCTCCGGCCGACCAAGGAGAACGTGGAACACCTGATCCAGGAGCTGCACCGCCCCAAATACAGCATCTACTTCATTTTCTTCAGTAACGTGATCAGCAAAAGCGAAGTGAAGACCCTGGCGGAGGCGGACGAGCAGGAAGTGGTGGCCGAGGTCCAGGAGTTCTACGGAGACTTCATCGCTGTCAACCCCCACCTGTTCTCCCTCAACCTCGTGGGCTGCGCCAGGGGCCGGAGCTGGGAGCCCTCCCTGCTGTCCCGAACCACCCAGGGCCTGACCTCCGTCCTGCTGGCCCTCAAGAAGTGCCCCATGATCCGCTACCAGCTGTCCTCCGACATGGCCAAGAGACTGGGCGAGAGCGTcaagCAAATCATCACCAAGGAATACGAGCTGTTTGACTTCCGGAAGACCGAGGTGCCCCCATTGTTGCTCATCCTGGACCGCAGCGACGACGCCATCACCCCCCTGCTCAACCAGAATCTCTACCTCAATTTCGGGGAGATCGGCACCAACATCAAGAACCTGATGGAGGATTTCCAGAAGAAGAAGCCCAAAGGACAGCAGAAACTGGAGTCCATCGCCGACATGAAGGCCTTCGTGGATAACTACCCGCAGTTCAAGAAGATGTCGGGCACGGTGTCCAAGCACGTGACGGTGGTGGGGGAGCTGTCGAGGCTGGTCAGCGAGAGGCACTTGATGGAGGTGTCTGAGGTGGAGCAGGAGCTGGCCTGCCAGAACGACCACTCCAGCGCACACCAGaaCGTGCGCCGGCTGCTGCAGAACAGCCGAGTGAGCGAGGTGGACGCCGTGCGGCTGGTCATGCTCTACGCCCTGCGCTACGAGCGCCACAGCAGCAACAACCTGCCCGGCCTCATGGAGGACCTCAACAGGAAGGGGGTTTCGGAGCGGCACCGCAGGATGGTCCAGTCCATGGTGGAGTACGGAGGGAAGCGCGTGAGAGGGAGTGACCTCATCACCCCCACGGACGCGGTGGCCATCACCAAACAGTTCTTCAAAGGACTCAAGggggtGGAGAACGTGTACACTCAGCACCAGCCCCTCCTGCAGGAGACACTGGACCAGCTGATCAAGGGCCGACTGAAGGACAGCCAGTACCCCTACCTGGGAGCCAGCAGCCTCAGAGACAGGCCCCAGGACATCATCGTGTTCGTGATCGGGGGGGCCACGTACGAGGAGGCGCTGACCGTCTACAACCTGAACCGTACCACCCCGGGGGTCCGCATCGTGCTCGGGGGGACCACCGTCCATAACACCAAGAGTTTCCTAGAAGAGGTCATGGCAGCCAGCGGTTCGGGGTGGACGTCCGAGCGGCCGCAGGGGTCGGGGCGGCCCCCCAGCAGGCGCTGAGCCGGGATCGATGACATCACATCCCGTTTCTTCCACCCTCCCGCCCCTCTGCCCCTGCCAAGACTGGAACTCGGCTGTCTGCTCCGGTCTTGGCAGGTTGTCTCGCAGGACACAAGCACACATTCCCACCCAGCACCTATAAGGCTCCCAGATCACCCACTCTGGCCCACACCAGGCTGGTTTCCACTTTATTGATTTCCCTGGCACGATGTGGCTGCGTGAATCTCCTGATCTGATTTGACTCGACTGCCCTTTAACCGCCAGCTACACAACGCCAACCGGCCCACAGTGCCAACAGCAGGGCGAGAGCAATCCTGGGAATTCTGGGAAATCCTGGGCAGCTTCCTGGCCCTCGCTTGACCTGCTGTGCCCCCCACCGCAACACTAGACTGAGATGAGggtatataggtgtgtgtgtgtgtgtgtgtggaatgaGCAACGTGACGGCAAGAATCGGGAAGTCCGACAAATGGGACTGCCGCAGAAAGCGCCGTGGAAAACGAGGCTGCTCGCTTTCGTTTTCTCGGCTTCTCTCCTGCAGACAGATCGCCCCCGGGCTGGTTGGTGGTTTTCAGTTCTCCCACGGCCGGTGTGGATACCGCAGGGAGGAAGTGGAGAAACTGTACGTTCCCTACACTTCCACGTtctctggtttgtttttgtgcgCCAATTTCTCTCGGTATCTCGTGAGCCGGGGGAGAGGGGAGCACACCTGCAGCGGGCCACACGATTCCAGAAACCCCACAGCTCtgttaagtctcactgaagcgGCAGCGAAACAGACGGAGGTTTGGGGTCACGGTGGAAGAGAGACGCGCCCGGGAGAGTTTCACACCTGAGCCTTCCTGTTTTCCGTGGTTGCTTTCTGATTCTattgtaaaataacaacaacgaCGCCTTCGAGAGCTCCCACATTTACACTTTCACACAACGGCACAATAAATGCACGCACACAACTGTACAAACCAAGACCCGTCTGAGTGGAACGCCGCGTTTTCGTTTCGTGTGGTTCGATTGCTGTGTATGGGTGTTTGCTTACAAATTGTCTTGTGGGGTGGGCTATGTCTTAATATGGTGTCTGTGAATGTTATTAAAgttttgtaacaaaacaaatgaataaataaaatgaaattctaAACCAG

Function

symbol description
vps45 Acts upstream of or within regulation of lens fiber cell differentiation. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in severe congenital neutropenia 5. Orthologous to human VPS45 (vacuolar protein sorting 45 homolog).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 45

GO: NA

KEGG:

id description
K12479 VPS45; vacuolar protein sorting-associated protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012448 True 2951 mRNA 0.58 14 18295215 18320973

Neighbor

gene id symbol gene type direction distance location
AMCG00012441 NA coding downstream 17611 18261865 ~ 18277604 (-)
AMCG00012443 NA coding downstream 44209 18240923 ~ 18251006 (-)
AMCG00012444 NA coding downstream 87732 18195065 ~ 18207483 (-)
AMCG00012445 NA coding downstream 108420 18185723 ~ 18186795 (-)
AMCG00012442 NA coding downstream 112700 18180454 ~ 18182515 (-)
AMCG00012449 NA coding upstream 2032 18323005 ~ 18326883 (-)
AMCG00012450 psmb4 coding upstream 62705 18383678 ~ 18388229 (-)
AMCG00012455 fam63a coding upstream 149022 18469995 ~ 18476148 (-)
AMCG00012461 NA coding upstream 247876 18568849 ~ 18569085 (-)
AMCG00012463 NA coding upstream 274228 18595201 ~ 18601943 (-)
G136826 NA non-coding downstream 115528 18140751 ~ 18179687 (-)
G136820 NA non-coding downstream 182312 18112676 ~ 18112903 (-)
G136746 NA non-coding downstream 323362 17912238 ~ 17971853 (-)
G136750 NA non-coding downstream 331971 17941472 ~ 17963244 (-)
G136623 NA non-coding downstream 611032 17682207 ~ 17684183 (-)
G136915 NA non-coding upstream 99036 18420009 ~ 18493905 (-)
G136906 NA non-coding upstream 118606 18439579 ~ 18442587 (-)
G136951 NA non-coding upstream 223945 18544918 ~ 18546313 (-)
G136955 NA non-coding upstream 232034 18553007 ~ 18556113 (-)
G136968 NA non-coding upstream 293066 18614039 ~ 18614257 (-)
G136837 NA other downstream 57959 18205375 ~ 18237256 (-)
AMCG00012437 LOC106580258 other downstream 192886 18098177 ~ 18102329 (-)
AMCG00012414 NA other downstream 516093 17767410 ~ 17779122 (-)
AMCG00012416 NA other downstream 530654 17757334 ~ 17764561 (-)
G136666 NA other downstream 571147 17720726 ~ 17724068 (-)
G136900 NA other upstream 54357 18375330 ~ 18378297 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other upstream 195863 18516836 ~ 18537125 (-)
AMCG00012467 NA other upstream 606406 18927379 ~ 18933201 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other upstream 711630 19032603 ~ 19043449 (-)
G137199 NA other upstream 1120954 19441927 ~ 19507394 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location