AMCG00012451 (LOC101076171,LOC102795628)


Basic Information

Item Value
gene id AMCG00012451
gene name LOC101076171,LOC102795628
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18402305 ~ 18414912 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012451
TTGGGCTCGTCTAGCGTCAGCGGGTACAACGCTGTAGGAACCTCTCAGGCAGGCGGCGGGGACCCCTGGATGCTGGTTTCGGCGGTGACGGGGGGCAGCCATGGCGGACGACAGGCCTCGGTCGGTGAGCTCGAAGCGGGGCGCGCTGGCGGCGGGGGAGGGCGACACGGAGCCCAACATGCTGGTGCACAAACTCAAGAGCAGCATCTCgaaaAATATCCAGGCTAAAGTGGACTCCATCTTGCAAGACGTGCAGCGCTTCTCTGACAGCGATAAACTCTACCTGTACCTGCAGCTGCCCTCCGGCCCCAGCGCGGGGGAGAAGAGCAGTAGCGACTCCAGTTCCTTCAGCACAGCCGACCAACTGCACACCTGCAACTGGATCCGAAGCCACCTGGAGGAGCACGCCGACACCTGCCTGCCCAAACAGGACGTGTACGAGACCTACAGTGGGATCCGCAGGAAGACGGTGCTGAACATGCCTCTGCTTCCCAACCTGGACCTCAAGAACGACCCGTCGGAGCTGACGGAACTGGTGCAGACCTACAAGCAGGAGGTGACGGAGGCGGCCTGCGAGCTGATCTGCGACTGGGCCGAGAAGATCCTGAAGCGCTCCTTCGACACGGTGGTGGAGATCGCCCGCTTCCTGGTGCAGGAGCACATCGTGAACCCACGCTGCAGCCAGGCCGAGCTCATCACCTCCGCCGCACTGGCCGGCGGTCCTGCCAAGCCTCACAAGGGGGTGAAGAAGAGCCAGCCTCCCCCCAAGGGCAGTGGGCCAGAGGGCGAAGGCAACAGCCCAGAGACCAAGGATAAGGACAGCGGCGACCGGGCAGCGCCACCCAAGCAGTCCCCCGGCGAGAAGCCCGCGAAGGGCGTGGAAGGCGGCCGTCCGGGGGGGCGCGACTCCCAGGTGGAGGCGGTGATGAAGCGATTCCCCCAGCTGCTGCCACGCACCCCCGTCCCAGACAAGGTCCAGCTGCCAGCCCGCTCCTCACCCCCCGCGCTGGCGCCCAAGGAGAGGCCGGGCGTCAAGGTGACCCTGCCCATTGCCATGACCTCGCTGCCCCAGCCACAGGGGACGCCACTGCCCGTCATCAACATGATCCTGCCCACGGGCACAGTCAGCTTCCCGTATGCCGAGAAGGAGAGGGTGCCGGGCGTGGCTGCTGGGGCTGCACCGGGCCCCGTGCCCAGGCCCCGCCCCGCGGCCAAGCGGGCGCAAGACATGGTGGGCGAGGCAGGGTTGACGCCAACTAAGAGGAAGAGAGGGCGTCCCAGGAAGTCGCGGCCGGAGGAGACCGGGCCACTGCCACATGCCCAGCCCCCCGCCGCCACCACCGCCACCGGAGGGGTCATCCACAAGGCCCTGCCCTCCGTCCAGCCCTCTGTCACCACCATCTTGGAGGTCATGATCCAGGACCATGACGTGAGGGTGCTGGGTACTCTGCCACCCGGGCTGGATCCACAAGTCCAGCCGCTCCAGGACACGGTGGACCTCACTGTCCCGGAGGAGCCCAAGAGCCAAATCCTGCAGGTCTACCGGCCGGGGATGGACAGCCAGGGGCCCCTGATACTCCACACGGGGCCCGAGCTGGTGAGGGGAGACCCGGCCGAGCAGAGCCAGGGCTGGGAGGCCAGCAGGGCCATGGTGGAGGTGATCCGCAGGGTCCCGCAGTCCAGGGAGGCGAGCGCATGCCCTGAGGTGCAGGGTGAAGCATTTAGATTGAAGCAGGACTCCGGTAGTGGCGGCCCCTGCCTGGAGCTCAGCCTGAGCCCGGCCTCCCAGCCTCAGATAGTGGCCGTGGCACAGCAGCCCTCGCCCACCCCTCatgccagcagcagcagcagctagcCTCCTGGAGCCAGCCACGACCCCCGCCCGCCCCGGCCGGCTCAGCAGACACCAGACCCCTCTGCCTCAGCTGGGGGTGGAAGACGCCTACTGGAAAAGGGGTTCCAGGGAACTACAAGAAAGAATgcagaattattttgtattgattttattttctttctctttcttccccccTGCAGACACATCCAGGAAATGTGCAAGAATCAAATACTGGCACTTATTTTGAgagtattttactttttccttcAGGCCAAGACCCTGTTCTGTGTCCGTGTGAGtctctggtgtttttttttttgttgcttattATGACGgatatttaaatctgtttttaaaataacccATCTGGAGATGTGGGGATACAGTGTGTCTAACGCCTGGTGCTCCACAGGGTTCCAGATACAGGCCAGGCAGCAGAGAACCAACAATGTTTGGATCCAGAACCTGGTTTTCAGCACTTAAAGGACGTTAAGAGTATTGGACGGGTCAGACACCCTTGCAAGCTAAGCATTGGTGCTTCTTATTGCATCCCTCAGATGCACTTCCACACGTACGCCCAGCAGGGGCCACTCTAACCACTCATCCCTGCCAGTCTCTCGcactgcagtatatatatatatatatatatatatatatgttgggaCCTCTAAGGAACTGGAGTTTTTATCCAGCCCAGACATGagtaattaatgttaaaattaatttgcattgcattgtagaAAATTGTCAAATCCTTGTTTATCAAGTAGAATTGGTAACGGCgatcttttttttcagttttcagttttgttttgccagAGCATTTGATTAGTGtgacacattttctgttgcCTGTTCCACCACAATTGCCTCCGCTTTCCCCCTCCCAGAGTTCAGTGCTGGCTTCAATTGCCATGGCTCTGACAGTCGCCCAAAACAGGTCTTGAAGGGACCATTCTTTGACAGCGGCCCAGAGTCACAATAATTCtgagattatttgtttttgtttttgtcctgaTGCTTGTGCTTCTTTCTGACGCAGTCCTAAGGGCTGGCAAAGCTGAAAAGAAAATCCCCAACAGCGGTACAACACTTGAGATGTGAAGTCGAACACCCTAAAGCAATTTTTGGATCTGCAGCAATACTGCCAGTGAGCTGAGATCCCATCCACTCTGCCCTCTTCTGGAGCGATTTGGTTTTTggtgcaaaagaaaacaaaaaggacagATGTTCTCCCGGTTTTTACAGTCATTCCTGCTTCCCGATTCACGGTTTTCGACCAGGTATCACCTTTTCACATGCTTATATGAAGTTCTGACTTCAAAGTACAGCAAcagtacggtggccctgaagtgcaaaacacaacaacaaaaagaaaaacaaaaaaataaaacaagacaaaaacataaagATTTTTTACGGAATTGCGACATCTACAGtcctgcctttttgtttttgtgtttgtccttttgtttttgtttttttttgcattttccctTTTGCAATTGcggttttctttttgctgttgTGGTTTGCACATCCGGGCCACCATACGAAAGTCGAAGAATGAAGAGTCGAtcggattttgtttttgcatcgAATTTGTCAATAGTTCCCCCCTCCCCTGCCGTtttggcaataaaataaatgtgtgtcttGCACTTTATGTTTACCAGAAGATTTAATCTTACTTTTTGTACTGGtgtgcacattaaaaaataaataaaaaatgcttgatttaaaaacaaatgttaaatagCACCTTAAATGTTAGTCATTTTCAAGGTTCGACTCTGAATGTGCTAATGATGTTTTGAgctgttctgtattttttattcctcCTCAGTTTGTACATGGCCATGTTATCGAAtcttccttttaaataaatctatagCACTGAGGAATGTGGATATATTTTCATAACCCGCCctaaataaatgttgtgtatttaaG

Function

NR:

description
PREDICTED: DNA-binding protein RFX5-like, partial

GO: NA

KEGG:

id description
K08061 RFX5; regulatory factor X 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012451 True 3787 mRNA 0.54 9 18402305 18414912

Neighbor

gene id symbol gene type direction distance location
AMCG00012454 selenbp1,LOC107588475,LOC107556087 coding upstream 628 18389831 ~ 18401677 (+)
AMCG00012446 NA coding upstream 26312 18353011 ~ 18375993 (+)
AMCG00012447 NA coding upstream 51404 18329924 ~ 18350901 (+)
AMCG00012440 anp32e,LOC100707939,LOC102193634,LOC102789185 coding upstream 165117 18229745 ~ 18237188 (+)
AMCG00012431 NA coding upstream 222488 18174010 ~ 18179817 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding downstream 2051 18416963 ~ 18442351 (+)
AMCG00012453 NA coding downstream 30199 18445111 ~ 18466585 (+)
AMCG00012457 NA coding downstream 61799 18476711 ~ 18491471 (+)
AMCG00012456 NA coding downstream 78672 18493584 ~ 18512606 (+)
AMCG00012458 NA coding downstream 130666 18545578 ~ 18552814 (+)
G136848 NA non-coding upstream 85229 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 132798 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 500649 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 738135 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 753198 17648628 ~ 17649107 (+)
G136866 NA non-coding downstream 18658 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 58321 18473233 ~ 18474916 (+)
G136969 NA non-coding downstream 200986 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 487600 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 517512 18932424 ~ 18933248 (+)
G136864 psmb4 other upstream 13999 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 267924 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 498495 17902832 ~ 17903810 (+)
G136658 NA other upstream 558384 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 607061 17792251 ~ 17795244 (+)
AMCG00012460 NA other downstream 124633 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 632585 19047497 ~ 19053829 (+)
G137083 NA other downstream 754836 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 822777 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 917416 19332328 ~ 19350202 (+)

Expression


Co-expression Network