AMCG00012454 (selenbp1,LOC107588475,LOC107556087)


Basic Information

Item Value
gene id AMCG00012454
gene name selenbp1,LOC107588475,LOC107556087
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18389831 ~ 18401677 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012454
ATGACCACGCCCCCTGGCTGGCCCGTTCGTGACGTCACTGTGGCGCCCCCTCTCTGCACAACCATCAACTGGAAGAGCAGCTCAGATCCTGCAGCAATGGCAAAGTGTGGGAAATGCGGACCGGGCTACAAGAGCCCCCTGGATGCCATGAAAGGCCCCAGAGAGGAGATTGTCTATGTGCCCTGCATCTACCGCAACACTGACATCCAGAAGCCCGATTACCTAGCAACAGTGGACGTGGACCCCAAATCGGCCACCTTCTGCCAGGTGATCCACAGGCTGCCGATGCCCAACCTGAAGGACGAGCTGCACCACTCGGGCTGGAACGCCTGCAGCAGCTGCCACGAGGACGCCTCCAAGAAGCGGGACCGGCTCATCCTGCCCGCGCTCATTTCCTCCCGCGTCTACGTGGTGGACGTGGGCACCGACCCCCGCGCCCCGCGCCTGCACAAGatggtGGAGCCCACGGAGCTTTACTGGAAGTGTGGTCTGGCGAACCCCCACACCTCGCACTGCCTGGGCAGCGGGCAGGTGATGATCAGCACCATGGGCGACCCCGAGGGCAACGGCAAGGgggGCTTCGTCCTGTTGGACGGGCAGTCGTTTGAGGTGATCGGGAACTGGGAGCTGCCGGGGGAGGCGGCCCCCTTCGGCTACGATTTCTGGTACCAGCCGCGGCACAACGTGATGATCAGCACGGAGTGGGGCGCCCCCAAGGCCCTGGCCAACGGCTTCAACCCAGAGGACGTCAAGGCCGGGCATTACGGGCGTCGGCTGCACGTGTGGGACTGGACCACGCACAAGAAGCTGCAGACCCTGGACCTGGGCGAGGAGGGCGCCATCCCCCTGGAGGTGCGCTTCCTGCACAACCCGGCCGCCCCGCAGGGCTTTGTGGGCTGTGCGCTCAACTCCAGCGTCTTCCGCTTCTACAAGACCCCGaagGGAGACTGGGCGGCAGAGAAGGTCCTCAGTGTCCCTGGCAAGAAGGTGGAGGGATGGATGCTGCCGGAGATGCCAGGTCTGATCACGGACATCCTGATCTCTTTGGACGACCGCTTCCTGTTCTTCAGTAACTGGCTGCACGGAGACATCCGCCAGTATGACATCACCGACACCAGGCACCCCAAACTGGTGGGGCAGGTCTTCCTGGGCGGCAGCATCCTGAACGACAGCCCCGTCAGAGTGCTGCAGGACACCGAGCTTGAGAGTCAGCCGGCGCCCCTTGTGGTGAAGggGAAGAGGGTCCGCGGGGGTCCACAGATGATTCAGCTGAGCCTGGACGGGAAGCGGCTGTACGTCACCACCTCTCTGTACAGCGGCTGGGACCGGCAGTTTTACCCGGACCTCATCAACTCAATGAGAATTTCCTGGTGGATTTCGGCCGGGAGCCCGAGGGTCCGGCTCTGGCCCATGAAGTCCGCTATCCTGGGGGCGACTGCACCTCCGACATCTGGCTCTGAGCCTCGGGGGGGCGGGGTGAAGGCTCGGCACTTCCCTTAA

Function

symbol description
selenbp1 Predicted to enable methanethiol oxidase activity and selenium binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; membrane; and nucleus. Is expressed in several structures, including brain; cardiovascular system; digestive system; endoderm; and pleuroperitoneal region. Orthologous to human SELENBP1 (selenium binding protein 1).

NR:

description
selenium-binding protein 1 isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0008430 selenium binding molecular_function

KEGG:

id description
K17285 SELENBP1; methanethiol oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012454 True 1500 mRNA 0.64 14 18389831 18401677

Neighbor

gene id symbol gene type direction distance location
AMCG00012446 NA coding upstream 13838 18353011 ~ 18375993 (+)
AMCG00012447 NA coding upstream 38930 18329924 ~ 18350901 (+)
AMCG00012440 anp32e,LOC100707939,LOC102193634,LOC102789185 coding upstream 152643 18229745 ~ 18237188 (+)
AMCG00012431 NA coding upstream 210014 18174010 ~ 18179817 (+)
AMCG00012432 NA coding upstream 220087 18162576 ~ 18169744 (+)
AMCG00012451 LOC101076171,LOC102795628 coding downstream 628 18402305 ~ 18414912 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding downstream 15286 18416963 ~ 18442351 (+)
AMCG00012453 NA coding downstream 43434 18445111 ~ 18466585 (+)
AMCG00012457 NA coding downstream 75034 18476711 ~ 18491471 (+)
AMCG00012456 NA coding downstream 91907 18493584 ~ 18512606 (+)
G136848 NA non-coding upstream 72755 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 120324 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 488175 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 725661 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 740724 17648628 ~ 17649107 (+)
G136866 NA non-coding downstream 31893 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 71556 18473233 ~ 18474916 (+)
G136969 NA non-coding downstream 214221 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 500835 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 530747 18932424 ~ 18933248 (+)
G136864 psmb4 other upstream 1525 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 255450 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 486021 17902832 ~ 17903810 (+)
G136658 NA other upstream 545910 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 594587 17792251 ~ 17795244 (+)
AMCG00012460 NA other downstream 137868 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 645820 19047497 ~ 19053829 (+)
G137083 NA other downstream 768071 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 836012 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 930651 19332328 ~ 19350202 (+)

Expression


Co-expression Network