AMCG00012459 (cdc42se1,LOC106569912,LOC106588345,LOC102790437)


Basic Information

Item Value
gene id AMCG00012459
gene name cdc42se1,LOC106569912,LOC106588345,LOC102790437
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18516836 ~ 18537125 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012459
TGATGGCCCAAGGGAGGCGCTCTTCAGAAGAAATGACtttgaaaaagcacaaaaaaaaaaaaaaagttctcgTTTCAAACCTAAGAATTTCCTGATTGAAAGCTGGGAACCACACCTCGGTGAGTCTGTACAGAGCTGCCGAGTCCGGATAGTACAGTCCTGCCTGAaaggaaaagggggaaaaaaggcttTTCAGAGGGAATCTGGCCTCTGGACTGAAGTCTGAGACAACCGAGGTCGGAACAGAGAACAGCGAAACCGCAAGCAGACGCACcgaaagagagtgagagtgaggaTCTGTCGGCAGCCAGGCGGAAGAGAGACGAGAGAGCATCCGAGGTTTTGGGATTACACCACTGGGAGGCAGAAGGGGGGGCTGAGGAAGGACTTGGATCACTTGGATGGAGTAGCCCCCTAGCAAGGACCCCAGAGGATTGGATTACTACAGATTGgaccctcccctcccccccccttttttttttctttttccccatcCTCCCCTTCCCACTCCCTCCTTTCCTCTTCCCTCCACCCACTGCCTCTGCCAGTTGAGAGCTGGGAAGAGGTGACTTCAAGGAACCgggatttattaatttattttgtgaatcatTGGTGGAGGACTCCAAACATGAGCGAGTTCTGGCACAAGATCGGATGCTGTGTGGCGGAGAAACCCCAGCCGaagaagaagaggaggaagatcGACCGCAGCATGATTGGGGAGCCCATGAACTTCGTCCACTTGACGCACATCGGCTCCGGGGAGATGAACGAGGGGCTGCAGCCGTCGGGAACAGTCCAGGAACAAATGAGGTCCAAAGGTCCCAGTGTCAACGGGCGCAGCAGGAGGACAACATGGGAATCCACTATTAAGTACCCCCTTAAATTTGGACAGGACTATATCCCTTACCGTGAACTAGACCCCCAACCTTCTGGACAAAACCTCCATCACTTCCGATCCTACACAGGAGGACTTCCCCGCTGGACGCCCATCGTTTTGCCTCACCACCACCCTGCCCCCCGATCCGTAAGCCCAAAAGAATGACATCTATGGAATCCAGGAagtacataaaacacacaaaccaaaaaaacaacctccTAGTCATTTCCGATGGAGAAAGAGACTTTGGGGTTTGGAAGCAGAGTATCGTTCCACTGGTCTGACCATGGAGACTGTGTATGCACATCATGGGGGGGGTTAAGCAGGGAAGAGAAGCGTGTCCATACACTGGGCTTTGTAACATGGGCCACTTTAATGTGTGTAGATCTCATTGTAGAACCTTTCAGGGCTCTTCTCAAAATGAACCTCCACCTTCTCCAGCTGCCAGCTTTGTGTGCACACTGCCAGACCAGCCAGAACAATTATGGACGGTCCCTTACTTATTCTTTGTCCCGAGTACATTATTAGGGGTGTGAGTGAGGGGAGGGGCTTCTTTTTGGACTTACTAAATGTAGCGTAGACTAGCAGAATGTGAcggttttgattttaatttaatttgcagccGCTGGGGCATCCGCTGGCTCGTGCTTGTGTACAGTTGAATCAaatctgatgtgtttttaaggatcattttacaaaatcttgtttttaattgtggtGGTTGGTCTTTTGATGTGGGGATGTGGATTTCATGGAGCGTTTCATTTCTGACCGGCCAAACCAGGGTGGGTCCATCGGCAGACGCTCATTCTGAGACCAAATGTTAGAGGGTCTGTTTCCAGAAAGCCAAGCCAACTAGTGCTGGGTGTTTTGTTGCAAAATTGCAAAATTGTTCGCCGCGCACTGGCTGAGCGAGAGCCAGTATAGAAGCTTTTGGCCATTTCCGGTCCCCAAAACATTTCGGATCAGTCTAGAACCGCTAGACGGACTCTGACCCTCTACAAATTGACGGAATTGTGGATTCATCCACAAAACCGGGGAACTATTTTCAAGACTGAGGGAGTGGCATTTTCGTATGCCATGATCGTTTTGCATTTCGTagcgtaaaaaaaaaaaaattgtgcgCCTGGTTTCACATCTACCCGCAGGTATACTTGTACTTGAACGACATTATGATGAAAGGCTAGTTTGAATTCTGCAACGGCATCCCCTCGTCAATTGTTATTTCCCAGATCTTTGGACAGGATCAGAAACTGCAATTTGTATCGCCATGAATGACATGAATGGatagtatttaaaacataacaaaggTGCAACCGACAGATATAGTGACAGcaagtgattttgtttgtttttaagaagtgTGAACCGTTGCTTAAGACATACAGGCACACAAACCTACACGTCTTGCAGAAAAGGGTTCTAAGCCACGCTCACTTCAAATCGCATCAACCGCAAAAATGTGCTAGGATTCTACCTCAGCATGcccagtttttaattaaaaataaacacattacaaatgaaGGTAGCAACCGTTTCAAGGGCTGGACAATTAACCATCACCACCAAAGCAACGTCACCAAAGAGTTCCACTTTCACCGGGTTGTGTAATTTTGATCCTCAACGGTCCGTACACACATTGGTCTGGTTGTACACTGGATCACCCACACTTTCGATACTTTCCATGATCCCCTTTACTGGACTATGTGACGCCTCCGAGGCTCGGTATTAACACGATGAACAGCCCTGCGTTTATATGACTGTTTTCTCCAGGTACCTCGAAAAGGAAATAGCCAGGAggggatctttttttttttgttgcaattTTGAACTTCTTGTTAagtgttctttgttttgttttgaattcttTGTTTCCCCCACCATGTGCGTAACCGTCTGCGCAAAATCCACAGGGTGTGAATCACAACTTGTCTCCCACGAATCACAGAGAGAGAATGCAACCCAAAATAATCCCCTTTAAAACATGTCAACTGTGAGATATACTTGCTAGCTTTTTCTTCCAAGAAGTGTGGCCACCTGTGAGACTTTGATTAGGACCATAACGCCGTGCCACCGAGAGATTTCTGTTCCAGTGTTTTATCAATCAATGAATCCACAAGGACCTAAAAGGCACTTCTAAGAAAGTGTCGAGGAATCATGTTCCACAGCCCCGACTCGAGTATTAACACTTCGCCAATTCAGTTTGTCTACTGATACCTGTAACTGCATTATCCAGAGGccaggtatttttattttaagctcCAGTTACCACCCCTCCCCAGAAAATTCCCAAAACCAGTGTTGGGTTTTCCACATATCTTTCTAAAGTGCTCAGCTGCACTCGGAAACCACATATCCTCTTTCAGTTTCAAACAAAAGGGCAGTTCTGTCTGTTCCggttctgtttatatatttcgGGAATatcaataatgacaataataaaagcCATTCACTGGATTAAATATGATTAACTGTattagcatttttaattattattttaaactgctctatgtgtctgtgttgcaagatttttttttttttttggtctttggTCTTTTGGGGTCTTTTCCATTCCCCTTCAGTGCACCtctggtttattattattgtcactaGTAATTGGTGTTTTCTTGATATTTATGTTGACTGAAAAATAACCGTGAGACTTTGCAAAGACCAGGAAAAAGCCAGcatgtttctatttgtatttttgttgtttccgCTTTGCCACTGAGGGAGGGGTCAGgttgtttcattttgtaatgatGGCTGGCGTGAATGAGGGTGCAAGACAAACGACCAAAAGAAACCTGTTGTTGAGTATTTGTGTGCTGACTTGTGGcccttctgtgttttgtttttttaaatacagttgatATTTTAAGTACA
>TU172157
AACAAAGCGAGCGGTTTTGAAGTGTTGCCACTTTTCACGCCTGGGTGCAGTTCCCGTGATGGCCCAAGGGAGGCGCTCTTCAGAAGAAATGACtttgaaaaagcacaaaaaaaaaaaaaaagttctcgTTTCAAACCTAAGAATTTCCTGATTGAAAGCTGGGAACCACACCTCGGTGAGTCTGTACAGAGCTGCCGAGTCCGGATAGTACAGTCCTGCCTGAaaggaaaagggggaaaaaaggcttTTCAGAGGGAATCTGGCCTCTGGACTGAAGTCTGAGACAACCGAGGTCGGAACAGAGAACAGCGAAACCGCAAGCAGACGCACcgaaagagagtgagagtgaggaTCTGTCGGCAGCCAGGCGGAAGAGAGACGAGAGAGCATCCGAGGTTTTGGGATTACACCACTGGGAGGCAGAAGGGGGGGCTGAGGAAGGACTTGGATCACTTGGATGGAGTAGCCCCCTAGCAAGGACCCCAGAGGATTGGATTACTACAGATTGgaccctcccctcccccccccttttttttttctttttccccatcCTCCCCTTCCCACTCCCTCCTTTCCTCTTCCCTCCACCCACTGCCTCTGCCAGTTGAGAGCTGGGAAGAGGTGACTTCAAGGAACCgggatttattaatttattttgtgaatcatTGGTGGAGGACTCCAAACATGAGCGAGTTCTGGCACAAGATCGGATGCTGTGTGGCGGAGAAACCCCAGCCGaagaagaagaggaggaagatcGACCGCAGCATGATTGGGGAGCCCATGAACTTCGTCCACTTGACGCACATCGGCTCCGGGGAGATGAACGAGGGGCTGCAGCCGTCGGGAACAGTCCAGGAACAAATGAGGTCCAAAGGTCCCAGTGTCAACGGGCGCAGTAGCTTATTATAGTGCCTTCGGAGGGCAGGAGGACAACATGGGAATCCACTATTAAGTACCCCCTTAAATTTGGACAGGACTATATCCCTTACCGTGAACTAGACCCCCAACCTTCTGGACAAAACCTCCATCACTTCCGATCCTACACAGGAGGACTTCCCCGCTGGACGCCCATCGTTTTGCCTCACCACCACCCTGCCCCCCGATCCGTAAGCCCAAAAGAATGACATCTATGGAATCCAGGAagtacataaaacacacaaaccaaaaaaacaacctccTAGTCATTTCCGATGGAGAAAGAGACTTTGGGGTTTGGAAGCAGAGTATCGTTCCACTGGTCTGACCATGGAGACTGTGTATGCACATCATGGGGGGGGTTAAGCAGGGAAGAGAAGCGTGTCCATACACTGGGCTTTGTAACATGGGCCACTTTAATGTGTGTAGATCTCATTGTAGAACCTTTCAGGGCTCTTCTCAAAATGAACCTCCACCTTCTCCAGCTGCCAGCTTTGTGTGCACACTGCCAGACCAGCCAGAACAATTATGGACGGTCCCTTACTTATTCTTTGTCCCGAGTACATTATTAGGGGTGTGAGTGAGGGGAGGGGCTTCTTTTTGGACTTACTAAATGTAGCGTAGACTAGCAGAATGTGAcggttttgattttaatttaatttgcagccGCTGGGGCATCCGCTGGCTCGTGCTTGTGTACAGTTGAATCAaatctgatgtgtttttaaggatcattttacaaaatcttgtttttaattgtggtGGTTGGTCTTTTGATGTGGGGATGTGGATTTCATGGAGCGTTTCATTTCTGACCGGCCAAACCAGGGTGGGTCCATCGGCAGACGCTCATTCTGAGACCAAATGTTAGAGGGTCTGTTTCCAGAAAGCCAAGCCAACTAGTGCTGGGTGTTTTGTTGCAAAATTGCAAAATTGTTCGCCGCGCACTGGCTGAGCGAGAGCCAGTATAGAAGCTTTTGGCCATTTCCGGTCCCCAAAACATTTCGGATCAGTCTAGAACCGCTAGACGGACTCTGACCCTCTACAAATTGACGGAATTGTGGATTCATCCACAAAACCGGGGAACTATTTTCAAGACTGAGGGAGTGGCATTTTCGTATGCCATGATCGTTTTGCATTTCGTagcgtaaaaaaaaaaaaattgtgcgCCTGGTTTCACATCTACCCGCAGGTATACTTGTACTTGAACGACATTATGATGAAAGGCTAGTTTGAATTCTGCAACGGCATCCCCTCGTCAATTGTTATTTCCCAGATCTTTGGACAGGATCAGAAACTGCAATTTGTATCGCCATGAATGACATGAATGGatagtatttaaaacataacaaaggTGCAACCGACAGATATAGTGACAGcaagtgattttgtttgtttttaagaagtgTGAACCGTTGCTTAAGACATACAGGCACACAAACCTACACGTCTTGCAGAAAAGGGTTCTAAGCCACGCTCACTTCAAATCGCATCAACCGCAAAAATGTGCTAGGATTCTACCTCAGCATGcccagtttttaattaaaaataaacacattacaaatgaaGGTAGCAACCGTTTCAAGGGCTGGACAATTAACCATCACCACCAAAGCAACGTCACCAAAGAGTTCCACTTTCACCGGGTTGTGTAATTTTGATCCTCAACGGTCCGTACACACATTGGTCTGGTTGTACACTGGATCACCCACACTTTCGATACTTTCCATGATCCCCTTTACTGGACTATGTGACGCCTCCGAGGCTCGGTATTAACACGATGAACAGCCCTGCGTTTATATGACTGTTTTCTCCAGGTACCTCGAAAAGGAAATAGCCAGGAggggatctttttttttttgttgcaattTTGAACTTCTTGTTAagtgttctttgttttgttttgaattcttTGTTTCCCCCACCATGTGCGTAACCGTCTGCGCAAAATCCACAGGGTGTGAATCACAACTTGTCTCCCACGAATCACAGAGAGAGAATGCAACCCAAAATAATCCCCTTTAAAACATGTCAACTGTGAGATATACTTGCTAGCTTTTTCTTCCAAGAAGTGTGGCCACCTGTGAGACTTTGATTAGGACCATAACGCCGTGCCACCGAGAGATTTCTGTTCCAGTGTTTTATCAATCAATGAATCCACAAGGACCTAAAAGGCACTTCTAAGAAAGTGTCGAGGAATCATGTTCCACAGCCCCGACTCGAGTATTAACACTTCGCCAATTCAGTTTGTCTACTGATACCTGTAACTGCATTATCCAGAGGccaggtatttttattttaagctcCAGTTACCACCCCTCCCCAGAAAATTCCCAAAACCAGTGTTGGGTTTTCCACATATCTTTCTAAAGTGCTCAGCTGCACTCGGAAACCACATATCCTCTTTCAGTTTCAAACAAAAGGGCAGTTCTGTCTGTTCCggttctgtttatatatttcgGGAATatcaataatgacaataataaaagcCATTCACTGGATTAAATATGATTAACTGTattagcatttttaattattattttaaactgctctatgtgtctgtgttgcaagatttttttttttttttggtctttggTCTTTTGGGGTCTTTTCCATTCCCCTTCAGTGCACCtctggtttattattattgtcactaGTAATTGGTGTTTTCTTGATATTTATGTTGACTGAAAAATAACCGTGAGACTTTGCAAAGACCAGGAAAAAGCCAGcatgtttctatttgtatttttgttgtttccgCTTTGCCACTGAGGGAGGGGTCAGgttgtttcattttgtaatgatGGCTGGCGTGAATGAGGGTGCAAGACAAACGACCAAAAGAAACCTGTTGTTGAGTATTTGTGTGCTGACTTGTGGcccttctgtgttttgtttttttaaatacagttgatATTTTAAGTACA

Function

symbol description
cdc42se1 Acts upstream of or within midbrain-hindbrain boundary morphogenesis. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in plasma membrane. Orthologous to human CDC42SE1 (CDC42 small effector 1).

NR:

description
PREDICTED: CDC42 small effector protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012459 False 3766 mRNA 0.45 5 18516836 18537069
TU172157 True 3848 lncRNA 0.45 5 18516836 18537125

Neighbor

gene id symbol gene type direction distance location
AMCG00012455 fam63a coding downstream 40688 18469995 ~ 18476148 (-)
AMCG00012450 psmb4 coding downstream 128607 18383678 ~ 18388229 (-)
AMCG00012449 NA coding downstream 189953 18323005 ~ 18326883 (-)
AMCG00012448 vps45,LOC106588336 coding downstream 195863 18295215 ~ 18320973 (-)
AMCG00012441 NA coding downstream 239232 18261865 ~ 18277604 (-)
AMCG00012461 NA coding upstream 31724 18568849 ~ 18569085 (-)
AMCG00012463 NA coding upstream 58076 18595201 ~ 18601943 (-)
AMCG00012462 NA coding upstream 78788 18615913 ~ 18651892 (-)
AMCG00012469 NA coding upstream 402847 18939972 ~ 18954308 (-)
AMCG00012468 NA coding upstream 422691 18959816 ~ 18967559 (-)
G136915 NA non-coding downstream 22931 18420009 ~ 18493905 (-)
G136906 NA non-coding downstream 74249 18439579 ~ 18442587 (-)
G136826 NA non-coding downstream 337149 18140751 ~ 18179687 (-)
G136820 NA non-coding downstream 403933 18112676 ~ 18112903 (-)
G136746 NA non-coding downstream 544983 17912238 ~ 17971853 (-)
G136951 NA non-coding upstream 7793 18544918 ~ 18546313 (-)
G136955 NA non-coding upstream 15882 18553007 ~ 18556113 (-)
G136968 NA non-coding upstream 76914 18614039 ~ 18614257 (-)
G136997 NA non-coding upstream 249831 18786956 ~ 18787155 (-)
G137008 NA non-coding upstream 365348 18902473 ~ 18902838 (-)
G136900 NA other downstream 138539 18375330 ~ 18378297 (-)
G136837 NA other downstream 279580 18205375 ~ 18237256 (-)
AMCG00012437 LOC106580258 other downstream 414507 18098177 ~ 18102329 (-)
AMCG00012414 NA other downstream 737714 17767410 ~ 17779122 (-)
AMCG00012416 NA other downstream 752275 17757334 ~ 17764561 (-)
AMCG00012467 NA other upstream 390254 18927379 ~ 18933201 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other upstream 495478 19032603 ~ 19043449 (-)
G137199 NA other upstream 904802 19441927 ~ 19507394 (-)
G137246 NA other upstream 1177037 19714162 ~ 19793531 (-)
AMCG00012503 NA other upstream 1365981 19903106 ~ 19910378 (-)

Expression


Co-expression Network