AMCG00012460


Basic Information

Item Value
gene id AMCG00012460
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18539545 ~ 18544490 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012460
ATGCTGGACACCCTCAACACCCAATACGACTCCTTCCTCTACTGGAGGCAGCCGATCCCAGAGCTGGACCTGGCCGAGCTAGAGGGCCTGGAATTGGTCAACGGGTCTTCGATCAAGGGCGGCAAGGGCgggaagaagaagagagacGGCCACAATGCGCAGGGTTGGGAGGAAGACAACACGGAGCTGTCGGAGTACAACACCTTCAACTACTGGAGGGAGCCCATCGCCAGCATCGACCTGCTAGACTTCGATCTGCTAATGCGCGACTCACAGACAAAACAATTGGATTTTTTCAACTCGCAGCTGGATTGCACAGATGAGTCTGTGCCACCCCAAGACAGATAA
>TU172158
GGCGGCGCAGGCGCAGACAGAGGGGCGGTGCGGCCGGCGCGCCTGCGCACTGGCACACGGCGAGCATTGCTCAGCAAGACGCTCGGAGCGGCCGAACAAAGACGTCCTTTGACGGGAGGCGCAGAGACCGCTTGAAAAGGAGAGCTGCTCAGATTCTCATCTGCGGGGAATAAACGTGCAAGATGCTGGACACCCTCAACACCCAATACGACTCCTTCCTCTACTGGAGGCAGCCGATCCCAGAGCTGGACCTGGCCGAGCTAGAGGGCCTGGAATTGGTCAACGGGTCTTCGATCAAGGGCGGCAAGGGCgggaagaagaagagagacGGCCACAATGCGCAGGGTTGGGAGGAAGACAACACGGAGCTGTCGGAGTACAACACCTTCAACTACTGGAGGGAGCCCATCGCCAGCATCGACCTGCTAGACTTCGATCTGCTGTGAAGACCACCCATCCAACCCCCTATCCCCAAGCTACCTACCATTACTGCACACGTTGTCAACTTGTAGTCAATAATGCACCCTTTGTCAAGTTTTTGGTCTTGCTTTAGAAAAAAAcgaacacacaaaacagtacTCATTCAGCACGCTTTGCTAGTTTGCAATCCAGAGCACTGCACTatacactgaaacaaaaaaatcacaaaagggAGGAACAGGGGTCTGAAAACTacagtcctggagagccacagttgGGTGATTTTTGTAGTTTGTTGGAAAGAGTCACAGAGGAGAAATCTGGCCCATTTTAACTCACGGACTCACTTTTATCTCtagattacataaaaaaattggGTGGCATTTTGCATTTGCCTGCAGAAATCAAGAGAGACTGTGGTTTTCCAAGACCCGGGTTTCAGAAGTAGACCATAGCGGTTCAATTCTTTTCAGAGCCTTTGGATTATTTAATTGCCCTGAACTCAGAGTCGGTGATGCACAGTATTAAAGGGTAATACAGGGACTCTTACATTAAACATCTAAATGCCAATGGGGAATTAGTTTGGGAAGGATTTTGTAAGCACGAATTAACAGACTAAGGCTTTTCCCAATTGTCATGTTCCTTGCAGCAGACAACCTACCCTGCCCTGCATCTTTCCGCTCCGTCCTCTCGGCTCAGTCTTCATTCAGTGCCGTTAAATGACCACGGCGTGGACAGTACACGATCTAACAAGCGGTCAGATGTGACAAGTCGTCCCAAACACGCACAGTAAGGTGTAGAACAAACGAGAGAATGCAGAAGGTATTATATTTGTCCTTTGAAGCTTAGCCTGCAAAACATACTCCTGACACCCATTCGATCAAGTTCGTAGGAGGGAGACAAAGCATTAATCCACCCAGTGGCCTTGTAAGGACTGGAGCTCTGAGCCAGTACCTTGATCGATACTAAGCAGTATTTCCCAATCGGAGGAAGGTCTTGCCAATAGACTTGACCAAGGCAAAAACTTAACCTGGGCTGCATTATGCTGCATGTTGACAGTATTATGATTTTTCCTGTTTGAGCCTCgagaaacaattgaaaaaaatgtatgtatttatttatttatttatttaatgtattcactttTTTGCCCctagtatttatttcagtatgcTGCTTCAGCCTGTCCCGGGCAAACTGAATGGAACGAGTGTATTGTGACAACCGGCTCGCCCAGCCAATCAGCACCACGTATCAGACGTTGAGCACCTTTCACATAGCTGTCTGTCCAGTTaaagaatgtttatttattgattgatttattcattcacCTATTTAGAGAAATACTATTTGATATTCACCGGTATGGTTCTAGATTGCCTCTGGTTTCCTGTTCTGTGCTCTAGAATGCGCGACTCACAGACAAAACAATTGGATTTTTTCAACTCGCAGCTGGATTGCACAGATGAGTCTGTGCCACCCCAAGACAGATAATGAAGGGTTTCCTAGCAGAGTCTCACTGTGATTTATCGTAATGACAATAAAAAGCGTTAGGGAAATTATGTAATATCTCTCAGCCTAAATCGCACTTCTCCAGTGTTCAAGACCAAAGCAATCAATGGGAACGAGGTCGAGCTCAGATTGCACTGATCTTGGCTGGAGTCTCACGGTGGGGGAGAGCAACTTTAGATCAGTGGTCCTTGGGGGTCACAAGCCAAGCGTTGAGGAGGGGTAAACTGGGGAGAGAGGGGTTGAGCATTTTCAATGAAGTTAAAAAGCATTTCAGAGCTCGGGTGGAAGGAAAACCAGGAGACTGGGGAGGCCCAAAGAGAACGCCAACTGAGTATCGGTGCTTAAATTGGTTCGTCTCTGCTTCAGAGGGTTAACGGCATTGGATTTGTGTGGTTAAAACGGCCGTGGTTGCcgtcaaaacaaaacaaaacacaaacccaaTGAGTTCACTTTTCCTACATGCATTACTCCTTCAGACGTGCCAGAAGGCTAAGGGATGTCAAGGAACATTTGGTACCAGACAAAGTCCCCCTGTGGGCCACTGAAGCACGTAGATCTGGAGAAACTGATTTACCCTCTGACTCGGATCTTGTTGAATATTCACCACGGTTTCCAGATCTTTAACCGTTCGGGAGTTTCAGTTCCCTAGAAATCCAGCAAAGGCTTTGGCTCCCCAGTACCAGAAGTGAAAATTGCCAATTCGAAAAGCTGATCAGTGTGGTTGAGAAAAATTATGACATGACCTGTTGTACTTATCTGAAAGTATACTGTTGTTCTAGAACCAGATCCTAGCATTACTTTACAAATCCCTTAAAGGATTCCTcaagttttgtattttcattttattccacCAATAAACAGAATCTGTGCTTTTCGATATTTATTCTGAAGAGGGGGTTGTGAGGGGCGGAGCGTGTACATACCAGACTGGTTTAACAGTTCACCTTAGTTCTCAAAACGCAGAGGCACTGACCTTTCACTCGCTAACACTGGAAAGACATAAACATGTTTGTATGATTGTGTTTCCTTTTATAATCATTGATATGATTCTTTGGTTGTGTTGGGATGCCAGGAGAGGAATGTGAACTGAATGTATAACTGACTACCCTCCCTCTGACGACATCGCTGATAGCGCTGTGGTGCGTGTGGTCAGAGCTGTTATCAAGCTGTTGCAGACCCCAGTATTGGCAGAGTATCAAACAACAGTcagtattcatgtgtttttttctgcttgcaTGAATTGTTTCGCCTTAATAAAAGACATTGTGCTTTAGCAAGTATGTgct

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012460 False 348 mRNA 0.55 2 18541417 18543186
TU172158 True 3218 TUCP 0.46 3 18539545 18544490

Neighbor

gene id symbol gene type direction distance location
AMCG00012456 NA coding upstream 26939 18493584 ~ 18512606 (+)
AMCG00012457 NA coding upstream 48074 18476711 ~ 18491471 (+)
AMCG00012453 NA coding upstream 72960 18445111 ~ 18466585 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding upstream 97194 18416963 ~ 18442351 (+)
AMCG00012451 LOC101076171,LOC102795628 coding upstream 124633 18402305 ~ 18414912 (+)
AMCG00012458 NA coding downstream 1088 18545578 ~ 18552814 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding downstream 351924 18896414 ~ 18908734 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding downstream 370728 18915218 ~ 18925049 (+)
AMCG00012465 LOC107732464 coding downstream 389094 18933584 ~ 18937478 (+)
AMCG00012470 NA coding downstream 510150 19054640 ~ 19065913 (+)
G136873 NA non-coding upstream 64629 18473233 ~ 18474916 (+)
G136866 NA non-coding upstream 68761 18433570 ~ 18470784 (+)
G136848 NA non-coding upstream 222469 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 270038 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 637889 17900908 ~ 17901656 (+)
G136969 NA non-coding downstream 71408 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 358022 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 387934 18932424 ~ 18933248 (+)
G137031 NA non-coding downstream 420044 18964534 ~ 18972066 (+)
G137027 NA non-coding downstream 475668 19020158 ~ 19026005 (+)
G136864 psmb4 other upstream 151239 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 405164 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 635735 17902832 ~ 17903810 (+)
G136658 NA other upstream 695624 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 744301 17792251 ~ 17795244 (+)
AMCG00012471 NA other downstream 503007 19047497 ~ 19053829 (+)
G137083 NA other downstream 625258 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 693199 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 787838 19332328 ~ 19350202 (+)
G137252 NA other downstream 1270435 19814925 ~ 19815617 (+)

Expression


Co-expression Network