AMCG00012476


Basic Information

Item Value
gene id AMCG00012476
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19271310 ~ 19273160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012476
ATGTACTTGTGCGATGGTCCCCAGCGGACAGCCTGGCTGGCTGTTCCAGTCTTCCTGCTCATGGTGGGGCTGCAGCCCTGCTTGGCCGAGTCGACCTGGCCCTGCCCCGCGCGCTGCGAGTGCCGACCCGATGTGCTGGAGGTGAACTGTTCCAGCCGGCGCCTGACCTCCGTGCCAGACGGTCTGTCAGCGGAGTCCCAGCGCCTGGACCTCTCTAGGAACCGGCTGAAGATCGTGTATGACGGGCAGTTCGTGGGGCTGTCGCGGTTGCAGGAGCTGGATCTGAGTGAGAACGGCATCTCCATAATCGAGATGGACGCCTTCCGGGGCCTGCAGGGCCTGCGGACGCTGTGCCTCCGGGGCAACCGGCTCAAGATCCTGCTTGTAGGGGTGTTTGCCGGACTGCCCAGCCTGCGCTTGCTAGACATTAGCGAGAATGAGATCCTGGTCTTTCTGGACTACACCTTCCGGGAGCTGTCCAACCTGCGACAGCTGGAGACAGGCGAGAACGACCTGGTGTTCATCTCACACCGGGCCTTCTCTGGACTACAGAGCCTGCAGGAGCTCAACCTGGACCGTGCCAACCTGACGGCGGTGCCCAGCGAGGCCCTGTCCCAGCTGCAGAGCCTCTCCCTGCTGCGCCTGCGCCGGCTCAACGTCAGCGTGCTGCCCAACCACGCCATCCGCCGGCTGCACCGCCTGCGCACACTGGAGATCTCCCACTGGCCGCTGCTGGACTCCCTGAGCAGCAACAGCCTGTTTGGGCTCAACCTGACCTCCCTAACCATCAGCAACTGCAACCTCACCTCCATCCCCTACGCCCCTATCCGCCATTTGGTCTACCTCCGCTACCTGGACCTCTCGTACAACCCCATCTCGGTGGTGCGCGCACACCTGCTGGGGGACCTGCTGAGACTGCAGGAGCTGCACCTGATTGGGTGCAGCCTGGTCCGCATCGAACCAGGGGCTTTCCGGGGGCTGTCCCAGTTCCACCTGCTCAACGTGTCCTCCAACCGCCTGCGCACGCTAGAGGAAAGCGTCTTCCACTCGGTGGGCAACCTGGAGACCCTGCGGCTGGATGGCAACCCGCTGGCCTGCGATTGCCGGCTGCTGTGGGTGCTGCGGCGCCGGCTGCGGCTCAACTTCGACGGCCGCCAGCCCTCCTGTGCCTCACCGGAGAAGGTGCAGGGCCGCCTCTTCCGGGACTTCACCGAGGCTGTCCTCCCGGGCCTGTTCACCTGCCGCCAGGCCCGCATCCTGGACCGCAAGCCCCAGGAGGTGCGGGTGGAGGAAGGCAGCACCGTGCTCATCTTCTGCAAGGCCGACGGAGACCCCCTGCCCTCCGTCACCTGGCTCACCCCGCACCAGACCCCGCTGTCGCCCAGTGGGAGGATCCGAGTCCTGGCCAACGGGACCCTGGAGGTGCGCTACGCCCAGGGCCAGGACAGCGGAACCTACCTGTGCGTGGCCAGCAACGCGGCCGGCAGCGACAACTTCTCTGTCAGCCTCCAGGTGAGGGGCTTCTCCCCGCTGCGCAACCGGACTGCATTCTTCCCCCCAGAGGTCGGGATGCCCCCCACCGCATCCAACTcttcctccgcctcctcctctgCCCAGCCCCCACAGCCCTTCCCCTTCGACGCCAAGACCCTCATCATCGCCATGACCATGGGCTTCCTATCCTTCCTCAGCTCCGTGGTCATCTGCTTCGTTTTCATGTTCTTCTGGAGCCGGGGTAAGGGCCAGATCAAGCACACGGCCACCATCGACTTCGTGCCGCGCAACTCTGTCGGGGGAGGGGGCAGCGGGGACGGGGCCGAAGGGGGGCGCTTCACCATGAAACTCATCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012476 True 1851 mRNA 0.65 1 19271310 19273160

Neighbor

gene id symbol gene type direction distance location
AMCG00012474 onecut1,LOC107746960 coding upstream 161807 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 205397 19054640 ~ 19065913 (+)
AMCG00012465 LOC107732464 coding upstream 333832 18933584 ~ 18937478 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding upstream 346261 18915218 ~ 18925049 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding upstream 362576 18896414 ~ 18908734 (+)
AMCG00012479 NA coding downstream 4556 19277716 ~ 19294096 (+)
AMCG00012481 NA coding downstream 27653 19300813 ~ 19333427 (+)
AMCG00012483 NA coding downstream 188131 19461291 ~ 19467495 (+)
AMCG00012484 NA coding downstream 203222 19476382 ~ 19483546 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding downstream 223287 19496447 ~ 19501256 (+)
G137110 NA non-coding upstream 34522 19234410 ~ 19236788 (+)
G137080 NA non-coding upstream 110167 19139125 ~ 19161143 (+)
G137079 NA non-coding upstream 144997 19125841 ~ 19126313 (+)
G137074 NA non-coding upstream 156448 19112770 ~ 19114862 (+)
G137027 NA non-coding upstream 245305 19020158 ~ 19026005 (+)
G137130 NA non-coding downstream 48846 19322006 ~ 19322259 (+)
G137144 NA non-coding downstream 88184 19361344 ~ 19395753 (+)
G137155 NA non-coding downstream 150393 19423553 ~ 19425538 (+)
G137177 NA non-coding downstream 231723 19504883 ~ 19509198 (+)
G137196 NA non-coding downstream 386586 19659746 ~ 19689785 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 32352 19237689 ~ 19238958 (+)
G137083 NA other upstream 96889 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 217481 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 726820 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 883004 18385289 ~ 18388306 (+)
AMCG00012480 NA other downstream 59168 19332328 ~ 19350202 (+)
G137252 NA other downstream 541765 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 618007 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 973491 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 1057921 20331081 ~ 20344646 (+)

Expression


Co-expression Network