AMCG00012479


Basic Information

Item Value
gene id AMCG00012479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19277716 ~ 19294096 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012479
ATGCTGAACATGAAATTTCTGGTTATTTTGTCGAACTGTCGACCGGGGAGGCGGGATACTGACGAATTGCGGACGTGGGCGTTTGCAGATGGATTGTGTCGACCGGACGCAGGGCACCTTCTGGGTGACAGGGCAGGAGTCACATTTACCCCGTCCCCCGTGACGTGCCTGGCTTTTGACCCGTTAAAGCCCGCACGGTTTCATTATGCCAACCCTGAGAACTACACATCGCTTTTCCACCAAGAGGGCACTGACGTCATCTATATTGGCGGCCGAGCTGTGATCTATGTGCTGAATTTCACGGAATCCGGGCTGAAGGAGACGCAGATTCCGGTGACGTTAGATGAGAATGGCAGAGAAGCCTGCCTGGACAGACGTGCTGCACCAGAAgccGAGTGTGAGAACTTCATCACCGTTATTCAGAAAGTCAACGACACTTTTGTGATCTGTGGCACAAATGCTGGTAGCCCCAAGTGTTGGCTTTTGCAAAATGAAACTGAGCTGACAGACACAACCAGCAATGGCCAGCTGATGGTGGCCTCCCACATCACCCCGCCATTCCCCTCTCAGCGATCCATCAGTCTTTCCACAGagGGGAACCTGTACTCGGCGCTTTCCGCATCCGGGCAGGGGGGAGGCTCAATCCGTCGCACCTACGGCCCCCGCAGGCTGCTGAAGACTGAGGACAAGTGGCTGCAGAACCCTGAGTTTGCTGGTGCGGCCATGGTCCCCGGGGTGTCTAGCCACAAGGAGGAGATCTACTTCTTCTTCAGCGAGAAAAACAGGACAGCCACTGTAGACGAGGACCCTTACCGGGCAAGAATTGGGCGTGTCTGCAtgGTGGATGAAGGGGGCATCAAGAACGTTCTGCCCGATTCCTGGACCACGTTCCTGAAGGCTCGAATCATGTGTGGTGTGCGCAACAGCCCCCAGCAATACAATCGCTTCAAGGAGGCCTTTCTCCTGACTGGTGTGGAGAAGAGGACCGGAGTCCTGTACGGAGTCTTCGCCAATGCCTGGGACTCTACTGTGGTGTGTGCTTACTCCATCGAGGAGATAGACAAGAGTTTCAGCACATCCAAACTGAAGGGCTACAGCAGCAGCCTGCCAGCACATCGGCCCGGAACGtGTGCGTTTAAGAATGTCACCTCCACCTTGGCAGCCAAGACCCTGAGCGTGATCCGAGACCACCCCGAACTTGAGGGCGCCATCCAGCCAGTGGGGAAAGGTCCTCTGACCCTGCCCACCACGCAGAGATTCACCAAGGCCGCTGCCGACATGGTGCTGGGAGTCAACGATGAACACTACAGCATCCTGTACCTGGGCACAGTTACCTCCCTGGCCATTGACTCCCAGAAGGGCCACCTCTATGTGGGCACCTCCTCTGAGATACAGCGCCTCCCCCTGGCGGACTGCCGACTCTACGGGGACAGCTGCCGAGAATGCGTCCTCTCCCGCGACCCATACTGCGGCTGGGACAAAGGCAGTGACAAATGCGTGGCGGTCCCCAAGGGATACAATATCAGCTCTAGCAGCACCATTCTTCAAAGCCTGGACCAATCCAACACCTCCGTGTGTGGAGACTCTGCAGaTCTAAAGGCCCCCAGCACTGACCCCAAAGAGGTGCTGGTGGATCAGGACAGCCCAATCCTGCTGCCATGTCCGGTCCGTTCCTACCACGCCTACTACACCTGGGAGAAGGACAACTGCCAGAAACGTTACCCCTGCTCTATCAGCGGGGGGTCCTGCATCCTCGCGCCCACCCCTGACCTGCCCCTCAAAGAGGGCATCTTCCGCTGCGTGGCCCTGGAGAATGGCCGCAAAGAGGAAATCGTCTCCTACCACCTGGTCTTCAACGGCGCCCTCCCCAGTGCCCCGGCCTGTGCCTCCCTGGCTACGTCCTTCCTGCTAGCAGCCATTACTGTCTGGCTACTGTAGGAAACCCATCACAGTGTAGCAAAGAGAAATCGCTATACTGCCATTTCTACTACTGATGATACAGTGGAGGGTCAGTCCACTAAGCACTTAGCACTTTGGTACCTGGTTTCAGTGcttagtggggaaaaaaatattaaatgaaatgcaaaagtgCAAAGAAGtcttacatatatgtattattattattattattattattattattggttttaaatatGTTGCCTGCTGTAGAGAtgctgctttctttttttcttcagcaaCTAAAACCTGAGATCAGTGAAAATGCACCTTATTTAGGATATTGAGAATTTTAGTTTGgcgtatttgtttttaatgcaagtATATATCTGGGAACTGAGAATGGCTCTGTATGATTTACCGCTGGTTCACGAGCTGATCCTTCCTTGGTGACACGCAAGCTTTATTTTTGGCTGTTGCTGGGAGATctgaagtttttcttttttttttcataacacATCCATAGGctgattgaaaaaaataaaataaaacgagACGTTTCTTATTCAAAATCACCTTTCAAACTCTACttcgattaaaaaaaatccttttcttGATACAAAGgcagttatcttttttttttcccagtttcTTGGATAACCAGGTACCAAGTCATGGCAGTGCTAAGAACTTTGTGTACACGGACCCTTGAGTTGTGAGAATATGATTCTTACACTCTATTGTTACTATAATTTATTTGGGGGATGGGGGATtctctacattttaaaattgaatgttAAATTATGGATTTGTGTAGTGGGGAGCCctaaagaaaattacaaaaaaaatcctacaGAAATCTAATATACCGTGTGTTTATATGTACTCAGAGCCATCCCATTTTTCAACAGGCAGCCTCAACTAAGCTAGCAAACTGACTTGGCACAACACCAAACCAAAAAGGGAGCAGACACAAACCGTCAGCATCTTCAATTACAGGGGGCGGTGTGGGAATCCTATACGAATCCACTTTTGCCTGGCCTTCATTCTGTAGAAAACCACGGAATTTTGCAGGATTCTAGATTCTTCTATTACAACAAACAATCTATACATAATTATCTtgacaggggaaaaaaagattaacgcactgcatgcattttgtattaGCTGTGAAAACTGGCTAATTGATGCATTGATGCTGGTTTCCGTTTACTCGGCAGAACTGAGCAAAGATCTCTAGCGATGTGGACAGTAAGCATTATGAATCTACTAAAACTCACAGGTGGACAGGAATATTTTCACACTTTGCCAGAATGCCTTTAAAGCAGGGATATAGAAACTCAATGCATGTTCAAACATCTCTTCAGTTTCCACCTTGCTGCTGTCTCCAGGCTAGAAATCTCGATAAATTGCTCTGTAGGTTTCCAtaggatttttttctctctttttttgtgggtttttttaATAGGAGAGAAACAGGAGAGGCAATTTAAACTGGTGTGACGGAGACTGATGATTGCCACAGAGGATTATGGGTAGAGATTGGGGTTGTTAAACTCTTGTTGTCTTGCCCACGCTCCATACTTCGTACTGGTTAACCCTGGCACCAACAGAAATCAACAAGAATTTTGAATTGGAATGTAATAAGACTAACAACCaagaggagagaagagggaaCAAATAATTTGTCACAGAtcacaaacttaaaaaacacCACATCCCTCTCCTTGCCTCTCCCTCCTTTTCTCCAGTCGATCACATGTTTCTACGGTGGCTCGTTAatgccatgaaaaaaaaacgTAGTTATGTCACGATCACAAGAAAATCTCAGGATGTCGATATTACAAGCCAGTAGGAGGTGATGGGTAATCCGTAGCTAGATCCttttttggttgtgttttgttttccctgcatATGACCTCAACGAGCCACCGTATGTCTCCCCAGTTTTTGCCAATTCGTTTTTCTCGCCTCGTAAGGAACACGCTGTCACGGGTTTGTGACGTATTGAGCTGCTCTTTTGATCACCTCATCTGCCTCGTGCTTTTTGTACCTTTTTGCACTGTCTGTGCCTCCTGCCAAATCACTCCTCTCGTTTTGCACTCAGTCACTGGCACATTCGCTCACTGCCCATTCTTGCGTGCGCAAAACGACCCATCGATCCTTTTCGGGTTTGACCCAGATTGCGTTTCTTTCACAAGGAATGAACTGACGTTATCTCCCTCACATCACACAAATGAAGTGGAAAGGGAGGATATATCTGATATCCAAATTAGTCAGGTGGACAGCTGTCGTGCTGTAGTCGCAGACGTTGTTTGAGCGAGCAGTTTACACGCAGAGAGAACCATGATATGGGAGAATTAGATGGTGATATCCACAGTCGTCATCGTTTCTCTGCCATCTTGGAGACCGTAACAGTACATGTGTCAACCTATATCTTTAAAATGGAGTGAGATCATCGACATTTGCACATGAATGTtggtttcatgttttgttttttggttgttttttaattttttaacctGATCCTCCTGAGTTTTTGACGCAAACATGCACTCGCATCATCACTTCACGATCACTGCAGGGAAACTCCACCAAAGTGCAGATGTGCTGTGCGCAGTAGCCCCTTAACCTCAAGGAACTAAAGGGAAAGGATCAGGGGATGAAATCTCATGAGATGGGTTTTTGGTTTTATGCACCTGGTCCTGTCAAATCGTTGGtgactttctgtgtgaagagaTGCGATCGCTGTGTTTCTAGTGATGAGACTCAAAGACTGTCCAGCACTAGCCAAAGGCAACTGACAGACTGAtctatattaattttatatgaattaCAGGTTATCTCCCTTGCAGTAAACCTGATTGATGTCTGCAtctttttttcaatttcttccCCTCAACCACTCTTTTTCACCATCGTCCCTTAATTAAATAAGATGTGGGCCTCTCTGTAGTAGTTAAGTGAGTTGCTGTTCTATAAGAGTTGCAGATCTTAGAATAACCGTGCGATTTTCGAAGCCTGCAAAATGATTTTCTGGGAACCATTCTTGTTTAATTATTACAGCTGTTCTTCAACGTAGTAACATATTTGTGAGAAAACAAGAGCTGGTctgatatatattattgtattgtactgtgggGTTCTGTCCAAGACAAGACTCAAAACCCGTTCTCCCACGCCACAGTGCAGCGACCTGACCGCAACACTACAAGGCCCAGGCCCAGGCCAATATTTagaatcttgtttttttttaggtttattcaatgtttattttatagtttttttagaTAAGTGTGCAATGTGAGATGCAAGCAGGCTCCTTCCAAAAAGAGTTCATAGCATGAAACCGAAGTTTGTGTCTGGACAGTCTTTGAACGAACACACCATTTGCCAAACACATTGTGATAACCTAACATGCACCATTATCTacatacttttatatattttttaaaaaacaatatataatatatatatacatactataaatatatgtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012479 True 5394 mRNA 0.46 14 19277716 19294096

Neighbor

gene id symbol gene type direction distance location
AMCG00012476 NA coding upstream 4556 19271310 ~ 19273160 (+)
AMCG00012474 onecut1,LOC107746960 coding upstream 168213 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 211803 19054640 ~ 19065913 (+)
AMCG00012465 LOC107732464 coding upstream 340238 18933584 ~ 18937478 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding upstream 352667 18915218 ~ 18925049 (+)
AMCG00012481 NA coding downstream 6717 19300813 ~ 19333427 (+)
AMCG00012483 NA coding downstream 167195 19461291 ~ 19467495 (+)
AMCG00012484 NA coding downstream 182286 19476382 ~ 19483546 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding downstream 202351 19496447 ~ 19501256 (+)
AMCG00012487 hdgf coding downstream 225010 19519106 ~ 19523682 (+)
G137110 NA non-coding upstream 40928 19234410 ~ 19236788 (+)
G137080 NA non-coding upstream 116573 19139125 ~ 19161143 (+)
G137079 NA non-coding upstream 151403 19125841 ~ 19126313 (+)
G137074 NA non-coding upstream 162854 19112770 ~ 19114862 (+)
G137027 NA non-coding upstream 251711 19020158 ~ 19026005 (+)
G137130 NA non-coding downstream 27910 19322006 ~ 19322259 (+)
G137144 NA non-coding downstream 67248 19361344 ~ 19395753 (+)
G137155 NA non-coding downstream 129457 19423553 ~ 19425538 (+)
G137177 NA non-coding downstream 210787 19504883 ~ 19509198 (+)
G137196 NA non-coding downstream 365650 19659746 ~ 19689785 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 38758 19237689 ~ 19238958 (+)
G137083 NA other upstream 103295 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 223887 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 733226 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 889410 18385289 ~ 18388306 (+)
AMCG00012480 NA other downstream 38232 19332328 ~ 19350202 (+)
G137252 NA other downstream 520829 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 597071 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 952555 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 1036985 20331081 ~ 20344646 (+)

Expression


Co-expression Network