AMCG00012480


Basic Information

Item Value
gene id AMCG00012480
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19332328 ~ 19350202 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012480
ATGTCCAGCCTAGAACCCAGCCCTGTTGCCAACAAGCTCCTTCTCCTCACCCAGCAGCAGATCCAGTCCTCGGGTTTGGACTTTGCTGCAGTCTCGGTTATAAagcTGTTCTCCAGGCCCACTCTGACAGTCAGCCCTGCAGGGTCAGtgtgggagggagagacagtgaCTCTGCAGTGCGACACTGAGGCACACAGAGCTGACACACAGCTGAGCTACACATTCACCAGAGACACCGAGACCCTGAGAGCAGCGGCTGCACAGAGTCAGCACATCGTCCCTGCAGTGACGAGAGGGGACTCTGGACTGTACCAGTGTGAGGCGCAGGCTGAGGGGACGAGTGTGAAGAGATGGAGTGACGCTGTGTGGGTGACTGTGTCAGAGGGCCGGCCTGCAGCCACACTGACCGTGGAGCCACCCTGGAGGCAGCTGTACGCCCTGGAGCCAGTGTCTCTGAGGTGTGGGCTGTCAGGGGCCCCTACAGGCTGGACATACCGCTGGTACAGAGATGGCTCTCCCACTGCGGTGTCCCAGACTGATGGACACACTATGACCGGGGACAGGCTCTCCAtcactgcagtgtctgtgtctgatgGGGGGCAGTATCAGTGTGAGGGCATGAGGGGGAGCCAGTCATTTGTCTCTCAGCGCTCTGATGGTCTCAATCTCTCCATCTCAGCAgagccccccggccccccacACTTCAGAGTGACCTTACTGCCTGTAAAGTGCTGA
>TU172394
AGGAGCTCAGCCTGTCCtgactgtgtgctctgtgttacAGGAGCTCAGCCTGTCCtgactgtgtgctctgtgttacAGGAGCTCAGCCTGTCCtgactgtgtgctctgtgttacAGGAGCTCGGCCTGTCCtgactgtgtgctctgtgttacAGGAGCTCGGCCCCAGCCTGTCCTGACTGTCTCTCCACTGGGACAGATATTCAAGGGAGACTCAGTGACTCTGCGCTGTGAGGTTAAAGGGGCGTCTGCAGGCTGGAGGTATTACTGGTACAGAACTGGACATCTGCAGCCCCTCTCTGACAGCAGCAGCGGAGCTGGAGGCAACTTCACCATCAGCGCTGTGACTGGGACACACAGAGGGCCGTACTGGTGCAGAGCTGAGAGAGGAGACGCACCCTATTACACTCAGTACAGCGGGGCTGTGACTCTGACAGTGTCAGagcTGTTCTCCAGGCCCACTCTGACAGTCAGCCCTGCAGGGTCAGtgtgggagggagagacagtgaCTCTGCAGTGCGACACTGAGGCACACAGAGCTGACACACAGCTGAGCTACACATTCACCAGAGACACCGAGACCCTGAGAGCAGCGGCTGCACAGAGTCAGCACATCGTCCCTGCAGTGACGAGAGGGGACTCTGGACTGTACCAGTGTGAGGCGCAGGCTGAGGGGACGAGTGTGAAGAGATGGAGTGACGCTGTGTGGGTGACTGTGTCAGAGGGCCGGCCTGCAGCCACACTGACCGTGGAGCCACCCTGGAGGCAGCTGTACGCCCTGGAGCCAGTGTCTCTGAGGTGTGGGCTGTCAGGGGCCCCTACAGGCTGGACATACCGCTGGTACAGAGATGGCTCTCCCACTGCGGTGTCCCAGACTGATGGACACACTATGACCGGGGACAGGCTCTCCAtcactgcagtgtctgtgtctgatgGGGGGCAGTATCAGTGTGAGGGCATGAGGGGGAGCCAGTCATTTGTCTCTCAGCGCTCTGATGGTCTCAATCTCTCCATCTCAGGTCAGTCCTGG

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012480 False 735 mRNA 0.59 4 19334696 19350202
TU172394 True 1029 lncRNA 0.59 3 19332328 19349057

Neighbor

gene id symbol gene type direction distance location
AMCG00012479 NA coding upstream 38232 19277716 ~ 19294096 (+)
AMCG00012476 NA coding upstream 59168 19271310 ~ 19273160 (+)
AMCG00012474 onecut1,LOC107746960 coding upstream 222825 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 266415 19054640 ~ 19065913 (+)
AMCG00012465 LOC107732464 coding upstream 394850 18933584 ~ 18937478 (+)
AMCG00012483 NA coding downstream 111089 19461291 ~ 19467495 (+)
AMCG00012484 NA coding downstream 126180 19476382 ~ 19483546 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding downstream 146245 19496447 ~ 19501256 (+)
AMCG00012487 hdgf coding downstream 168904 19519106 ~ 19523682 (+)
AMCG00012488 NA coding downstream 178270 19528472 ~ 19531808 (+)
G137130 NA non-coding upstream 10069 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 95540 19234410 ~ 19236788 (+)
G137080 NA non-coding upstream 171185 19139125 ~ 19161143 (+)
G137079 NA non-coding upstream 206015 19125841 ~ 19126313 (+)
G137074 NA non-coding upstream 217466 19112770 ~ 19114862 (+)
G137144 NA non-coding downstream 11142 19361344 ~ 19395753 (+)
G137155 NA non-coding downstream 73351 19423553 ~ 19425538 (+)
G137177 NA non-coding downstream 154681 19504883 ~ 19509198 (+)
G137196 NA non-coding downstream 309544 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 438785 19788987 ~ 19793532 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 93370 19237689 ~ 19238958 (+)
G137083 NA other upstream 157907 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 278499 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 787838 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 944022 18385289 ~ 18388306 (+)
G137252 NA other downstream 464723 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 540965 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 896449 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 980879 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 1050807 20401009 ~ 20422556 (+)

Expression


Co-expression Network