AMCG00012483


Basic Information

Item Value
gene id AMCG00012483
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19461291 ~ 19467495 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012483
CCGGTACCGGACAGCGAACCGCCAGGCCCAGAGGCCTAGAGAAGCAGCGACGGGGAGCGGAGATCTTCTTTCGCCATGTGGGGCTGGAGTCGGGGCGCCCTTGCCGGCGTGATCCGGGAGTTCAGTAAAGTGACACTGTCCTCAGCTCAAGGCTTCTCTCATTCAGCGCGCAGGagCACGGTGATCGTGGAGCGTTGCTGGCAGGTACCTTTGTCCAAGGAGGGCAAACTGGGGGGCCGAGGGGATGTGGTGTTCGTGAAGAAGTCTGTGGGCCGCAACAAGCTGCTCCCCGAGGGGCTGGCGCAAATGCTAGAAGGGACCTTGGAGAACAGAGTCCAGACCCGCACTGGACAGCTGACCGTGGAGTATCTGAAACAGTGCCGCCTTGAGGTGGGGATGAAGAACAATGTGGAGTACGTGCTGACCAAGGAGATTGTGTGTCGGCAGCTTCTCAAGAAGCTTGGCGTGTTTGTGCCACCCCATGCCCTGAATTTACCCGACGAGCCAATCAGGAGATGGGGGGAATACTGGTGCGAGGTCACGGTAGGTCAACCTCTGCTCCACTTTCTCGTGACCCTGCTGGAGGTGAATGGCATTGACACCGTCCGCATCCCCATGCCCGTGGTCAACTTTGTGAAGCCCCGAAGACAGCGCTACAACAGGTGGCTCGCGAAGAAAGAAGCCGAAACCCAAAGCACAGGCGCGGGAGAGGCTGTGAAAGAAGACTCTTAATGGAGAACTGTCCCCTCCCCGTCCCCAAAACCCACCTCTCCACCTTGGCCGCAGCTGCAGAACTGTCCAATCCCGTCCAAGGTCATGTAAAGCCTGTTCTAACGGAGAGCTGTCCCCGACCAGAACAGGAGCTCGTGTTTGGAGTGGGGCTGCTCAGCTCAGACACTGTTTGACAGAGTGTTTATCTATTTACTGAACCTCAATTAAatcgacaacaacaacaatacagaGACCACCTCTGACTGAATCTCTTTACTAGTCAAGACCTGGATCTGCAACGCAGACTTATCTTAACTACTCTGGCGAGTGGCTTGCAATTCCTTTAGCGGTGAATACATTTAAGTATAGAAAGTGTCCGGTTTCCCTTGAAGACGTACAGTGGTGAGGAGGACCATCCAGGGGACTCCCAACCCTCTGTGTCTTTTGCTCCACCTATGCTCTTGGACTCATCGAACCCTTAAATGGGGCGGTAGCTCGGCAAATCAAATTACCCTTGTAATCAGGTTTTGAAACGGACGGCTGGGTGAACATGTAATTAAAGGCCATCGAATTCTcaaaaacaaacccattttCACAAGTCAAATTTTAGCAAATTCTTAGTTTGAGTTAGTAAGTAGAGAGCAGCGCTGTTGGAACAGAAACTCTTAGGGTTGAAAAGCAAGGAGTTGGAAGTATTTAAAACTCTAGGGGGTGCTTAAGGACAAAccatacttttgttttttatgcagCTCTTTCAGATTAGTATTGGCAGAGCACTAATACTCTCACACTAAGCTGTCTAAATATTCTGTCATTTTATCACATAATTGAAAGAAGCTACAAGCatggaattaaatgaaaatgtagacCGCTCTGAGCACTGCAAACTCCAGTTGTAATAGCTGTGGACTTGTCAATCAAGACTTTGTGCTGAAGGCAAACTCACCATCTGCTTTTGATTAAGTTGGGGTCAAATTCCACATTGGGTCAAGGTCTGGGCTTTGTCATTCGCCAGTACACCTTTTAAGAAGAGGactaaatagaaacaaaataaaggaatgcTAGAGGCCTACAGGAAATTGGTAGCTTGTCAAGTACAGTTCATGTGCAGCTCTGCCCGGCCTTGACTGAGGTAGAACTTCACAGATTTAAAACCACAaccttgtaaaatgtaatttcctacCACTGTTTTTGCAGTAGTTGGTGGTTTGCTTTTCCCCTCTTTCAGGAAattgacatttttcatttgattgtgaTCTATTCAGGGTCTGCTTCACAGGGGCTCGGCAAGGAAATGAATGTGGGCCAATTTCAATACTGGACACACCGTGTGCTGCTCTAAAGAAAATACTGTTGTTcatgagaaaatacaaatttgatcaGATCACTCAGATAATTCACCCAAGGCCAGTGAatgatgtatttcaaat

Function

GO: NA

KEGG:

id description
K02939 RP-L9, MRPL9, rplI; large subunit ribosomal protein L9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012483 True 2141 mRNA 0.48 7 19461291 19467495

Neighbor

gene id symbol gene type direction distance location
AMCG00012481 NA coding upstream 127864 19300813 ~ 19333427 (+)
AMCG00012479 NA coding upstream 167195 19277716 ~ 19294096 (+)
AMCG00012476 NA coding upstream 188131 19271310 ~ 19273160 (+)
AMCG00012474 onecut1,LOC107746960 coding upstream 351788 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 395378 19054640 ~ 19065913 (+)
AMCG00012484 NA coding downstream 8887 19476382 ~ 19483546 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding downstream 28952 19496447 ~ 19501256 (+)
AMCG00012487 hdgf coding downstream 51611 19519106 ~ 19523682 (+)
AMCG00012488 NA coding downstream 60977 19528472 ~ 19531808 (+)
AMCG00012486 NA coding downstream 70051 19537546 ~ 19541766 (+)
G137155 NA non-coding upstream 35753 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 65538 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 139032 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 224503 19234410 ~ 19236788 (+)
G137080 NA non-coding upstream 300148 19139125 ~ 19161143 (+)
G137177 NA non-coding downstream 37388 19504883 ~ 19509198 (+)
G137196 NA non-coding downstream 192251 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 321492 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 697788 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 702931 20170426 ~ 20237873 (+)
AMCG00012480 NA other upstream 111089 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 222333 19237689 ~ 19238958 (+)
G137083 NA other upstream 286870 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 407462 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 916801 18539545 ~ 18544490 (+)
G137252 NA other downstream 347430 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 423672 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 779156 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 863586 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 933514 20401009 ~ 20422556 (+)

Expression


Co-expression Network