AMCG00012486


Basic Information

Item Value
gene id AMCG00012486
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19537546 ~ 19541766 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012486
CCGGAAGTGATCTGTTGTTGGGTCCAAGTGTGTGGGGAGCACGTTTCTGGTTTATGTTCAGAAACGTATCTTGATATGAAGAAATAATAACCTCAATTACACACCTCTTCCTTCCTGCTCCGTGTAAGCGAAGACaaaagCAGAAAGTGACGTGTCGATGACGTCACCTTAAACGCACAAAAACAGTTTGCACTTTGAAGTGACGAATGAGTGTCAGAGATGTAAGGCAGATGGATCTGTGCGCGTTTCCAAATGCTGCTCGTCAAACTGAGGATTGGAGGAGTTTTGCCCGGAAAACCATGGCATCCCAACGGAACTTTACCTCctaagtcattttaatttttttattttgtatttcctgcCCCCTgagaaggtaaaaaaaaacaacaacattttaaccCCTAGGCTCTCCTCGGATTTTCATGTCACAGCCAAGAATTCGTGCCCTCTCTCCTGATGGTACTAGGCCTCCGTCTTCTGTTTTCTCCTGGGATAGATTGTAGTGGTTCTTCCCCCTCCTTGGTACGGCTGAGAGGAAAACCACCAGATTTTTAAGTCCTGAAAGAAACTTCAGTGCCCTACACCCCTCCCCTTATCGCACAATGTCAGAAATGATTCTTAACCTGGATTTTTCCTGCGGGGGGTCCGTGGGTGGCAGGTCCAGCCAGTCCTCTGGCAACATAAAACACAGCAAGTTTGTGAAGAGACGCCGATTCCTGGAAAGAAAAGGCCTCCTTCATGACAAGCAGCTTCCCAAGCAGAAGCTGGGGCAGGAGCAAGCAAAGAGGCAGAGGCAGGGGCAAGGTGGAGGGCAAGGGCAGGGGCACAGACCCCCACAAAATTTGCCACCTAAAACCTCCCAGCCTTGGCCAAACGGGGTCCAACGCACTTTTGCACGCAACCAGCCCCCGACTGGGCCCCCAGCTTCCTCCACCAccagccccctgccccccaaagCTTCCTCCCATTCCCAGGGTCGCCCCCTTCCGCCCGCCCGCTCTCACCCCCCACCCATAGTGCAGCCCGCCCAGCTCCTGAGCGAGTTCCAGAGTGGCCTGCCGTCCTCACCTAAGCCCTTTAGGTTCCTGGCCATCGACTGCGAGATGGTGGGCACGGGGCCCAAGGGCCGGCAAAGCGAGCTGGCTCGCTGCAGCATTGTGGGGTATGACGGCGACGTGGTCTACGATGAGTACATCCTGCCCACCAACCCCGTCACCGACTACCGCACCCGCTGGAGTGGCATAAGCCGGCAGCACCTGCGCCACGCCACGCCCTTCCGGGACGCCAAGAAAGagATCCTGAAGATCCTGTCTGGGAAGGTGGTGGTGGGCCATGCCATCCACAATGACTTCAAAGCCCTCAACTACTTCCACCCGCCGGCGCTCACCCGAGACACCTCCCGCATCCCCCTCCTCAACCTGAAGGCCGGCATCCCCGAGAAAGAGCCCGCCTCCCTCAAGCGGCTCACCAAGGCCATCTTCAGCAAGGACATCCAGGTGGGCAGGAAAGGCCACTCGTCGGTGGAGGATGCCAAGGCCACCATGGAGCTGTACAAAGTGGTGGAGGTGGAGTGGGAGAGGAGTTTGGCCTCAAAGCCTGCCCCCCAGTGAGAATGAATTGGGGCTGAGGGTTGTAAAAGGAGCAGAGTGGACTCTTTAAGTTCtagcatttttttattagattttttaacAAAAGACCACTTCTCCCCTCCAGTTTCTTCTACAGATTGGCTTAAAAATATGCAATTGACGGTATTTTTTACTCCCCTTACCAGCAGACCACTCTTCAATTACACGTGTCCACAGCGGAAACAAAGCTGTACCTCCCTTTCCGCCATCCCTTAAGTGGGTTGGACAGGATACTTGAACCAGAAAGCGTGCTTGGTGTTTTACACAGCGCCTATATCCATAACACATGAGTGACGTGACCCAGGTTTGCGCCACCCTTCAGCAAACACTCCAGAGCTAAAACAGTACAGCTGGGTGGAGAGACAGGGACGTTTGGATTTTTTTGTGCAAATTCGGACACTCAAGCACAAGAGGGCGCCACAGGTCAGCTCTTCAGAACTTGCAGAGAAATTAAGGAAGTGGAAGGTGAATTTGTAGGACCTGTGATTTTCTACCGGCTTTTTAAACTATGATACAGACTTTTTTTACTTGGGTTTTTACTCCAGCCTCCGAGACCATTGCGAAAGCCTCCACAGAATCCCCAGAGGACGGCTTGTCTTGATGCTGGTTGGAGCCTGTTTGTCCTGTCTGCAATACCGGAATGCTAATCAAAATGCAATTGGTTTCGAATTTGATGACATCATACCTCAATACTGACTGAATCTGAGCGCTGCTAAAAACTATGGATATCTAGGATCCCCAAgctcattttttgttgttgatttgttgttgttgctaaggggatacatttaaaaaaaaaaacgtgcttTCTCCATGTCTTAAGATCTGTCTATgacaaatattacaatgttCTAGTTCTGTGTTCTAGAACAGGGTTCTTTCTGGTGTTCAAAATCAACAGGATGCTGACGTAATGTTTGGGAAATGTACTGgtgcaggaagaaaaaaaattataatacagatGTTTCATGTATGTGTTTCCAGTCTGcctcttttttatataatagtTGGTTTTAGCCTCTGCAGCACATTGAAATTGCTTCCATCCCAACAGCAATCTGGGTAATTTAGATCGGTTCAGTGATATTTACTCCTCAGCATTACTTACAGGAAAGCCAGAGATCAGGGGTGGCCCGGCCCCAGAGTGCTGCATTGACTTCTG

Function

GO:

id name namespace
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18329 ISG20L2; interferon-stimulated 20 kDa exonuclease-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012486 True 2790 mRNA 0.50 5 19537546 19541766

Neighbor

gene id symbol gene type direction distance location
AMCG00012488 NA coding upstream 5738 19528472 ~ 19531808 (+)
AMCG00012487 hdgf coding upstream 13864 19519106 ~ 19523682 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding upstream 36290 19496447 ~ 19501256 (+)
AMCG00012484 NA coding upstream 54000 19476382 ~ 19483546 (+)
AMCG00012483 NA coding upstream 70051 19461291 ~ 19467495 (+)
AMCG00012493 bcan,LOC106569870 coding downstream 16888 19558654 ~ 19581439 (+)
AMCG00012492 NA coding downstream 75972 19617738 ~ 19627369 (+)
AMCG00012495 NA coding downstream 221237 19763003 ~ 19787642 (+)
AMCG00012497 NA coding downstream 275753 19817519 ~ 19826263 (+)
AMCG00012496 NA coding downstream 310387 19852153 ~ 19856703 (+)
G137177 NA non-coding upstream 28348 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 112008 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 141793 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 215287 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 300758 19234410 ~ 19236788 (+)
G137196 NA non-coding downstream 117980 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 247221 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 623517 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 628660 20170426 ~ 20237873 (+)
G137348 NA non-coding downstream 659785 20201551 ~ 20201804 (+)
AMCG00012480 NA other upstream 187344 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 298588 19237689 ~ 19238958 (+)
G137083 NA other upstream 363125 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 483717 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 993056 18539545 ~ 18544490 (+)
G137252 NA other downstream 273159 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 349401 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 704885 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 789315 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 859243 20401009 ~ 20422556 (+)

Expression


Co-expression Network