AMCG00012487 (hdgf)


Basic Information

Item Value
gene id AMCG00012487
gene name hdgf
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19519106 ~ 19523682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012487
ATGCCCAGGTCGAACAGGCAGAAAGAGTACCAGCCCGGAGATCTGGTGTTTGCGAAAATGAAAGGCTATCCACACTGGCCAGCTCGGATTGATGAACTCCCAGAAGGAGCAGTGAAGTCCCCTTCCAATAAATACCAAGTCTTCTTTTTTGGCACCCACGAGACGGCGTTCCTGGGGCCGAAGGATCTGTTCCCTTACGAGGAGTGCAAGGAGAAATTCGGGAAGTCCAACAAGAGGAAAGGCTTCACCGAGGGTCTGTGGGAGATCGAGAACAACCCGACAGTCAAAGCATCGGGCTATGAGcctgcTAAGAAGGAGGGCTCAGTGGAGGCGGCGGGGAAGGGTGAAGGAGAGGGAGCTGGCGGGCCCGAAGCGCGAGAGGCGGGGCCGGAGGGCAGCAGCGACGAGGACGAGGGCAACCTGGACTCGGAGGACGAGGCGCAGGCCGAGACGAAAGGCGACAAGGAGAAGTCTGACTCGGAGGGGGCGGGGCATGACCACGGGGAGCCGGAGGCCAAGgccaataacaataacaatgcgGGGGTGGAGCCTGCGGCCCCTGTAGCACCTGCCACGCCCCCCAGCGGCGGCGATTCGAAGCTGCAAGGCCAGGCCACCACCCCTGAGGGCAAATTAACGCCGGAAAAG

Function

symbol description
hdgf Enables several functions, including cytoskeletal protein binding activity; heparin binding activity; and transcription corepressor binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of cell division. Located in cytoplasm; extracellular space; and nucleoplasm. Part of transcription repressor complex.

NR:

description
PREDICTED: hepatoma-derived growth factor isoform X1

GO: NA

KEGG:

id description
K16641 HDGF; hepatoma-derived growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012487 True 648 mRNA 0.61 5 19519106 19523682

Neighbor

gene id symbol gene type direction distance location
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding upstream 17850 19496447 ~ 19501256 (+)
AMCG00012484 NA coding upstream 35560 19476382 ~ 19483546 (+)
AMCG00012483 NA coding upstream 51611 19461291 ~ 19467495 (+)
AMCG00012481 NA coding upstream 185679 19300813 ~ 19333427 (+)
AMCG00012479 NA coding upstream 225010 19277716 ~ 19294096 (+)
AMCG00012488 NA coding downstream 4790 19528472 ~ 19531808 (+)
AMCG00012486 NA coding downstream 13864 19537546 ~ 19541766 (+)
AMCG00012493 bcan,LOC106569870 coding downstream 34972 19558654 ~ 19581439 (+)
AMCG00012492 NA coding downstream 94056 19617738 ~ 19627369 (+)
AMCG00012495 NA coding downstream 239321 19763003 ~ 19787642 (+)
G137177 NA non-coding upstream 9908 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 93568 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 123353 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 196847 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 282318 19234410 ~ 19236788 (+)
G137196 NA non-coding downstream 136064 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 265305 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 641601 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 646744 20170426 ~ 20237873 (+)
G137348 NA non-coding downstream 677869 20201551 ~ 20201804 (+)
AMCG00012480 NA other upstream 168904 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 280148 19237689 ~ 19238958 (+)
G137083 NA other upstream 344685 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 465277 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 974616 18539545 ~ 18544490 (+)
G137252 NA other downstream 291243 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 367485 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 722969 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 807399 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 877327 20401009 ~ 20422556 (+)

Expression


Co-expression Network