AMCG00012488


Basic Information

Item Value
gene id AMCG00012488
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19528472 ~ 19531808 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012488
AATGCGGCTTACGGCTTTGTTGGCAATGGCGGCCCGGGTCAGGGTGCCACCGGGCTACCGCTACGGCACCAACCGGCCCTGGACCATCAACGCCCAGAGACAGAACCCCCCGGGCAAGCGGCGCAACAAGGTGTTCCTGGAGCCCGTGGAGGACTGGCATGTGTTCAAAGGGGACACGgtGGAGGTTTTGGCAGGAAAGGACAGCGGGAAGCAGGGCAAAGTGAGCCAGGTGATCCGAGCCAGGAACTGGGTGCTACTGGAGGGACTCAATGTGCACTATCGCTACGTCGGCCGATCAGGGGATTACAAGGGGACGTACATGGCCAGCGAAGCCCCCCTATTGCTGAGAGACGTTTCCCTCGTCGACCCCACTGACAGGAAGCCCACAGAGGTGGAGTGGCGCTTCACGGAGGAGGGCGAGAAAGTGCGTGTGTCTCTCCGGACAGGGCATGGCCCCAAGGACACGTCCCCCGAAGACGCCTTGGAGAAGACCTACGTTGCATCTCTGAAGACTTTTGAGGAGGAGATCATGGAAAAGATGGGCATTGTGGAGCACGGGCGCCCCAAGAAGAGCTTCTGGTACTAAGCAGAGCCGGGGTCCAGAGCTGCAGGCTGAACTTCACCgtgctgtctttgtttttgttttttttggactAAAGCCTCATCCTGTTAACTGGTCCCCAGAATAAGAGACAATATTCTTGTTGGCTGGGAGGTTTTAATCGGCTGGATTAGTTGGCAACTTCAGTGTTTTTGGGGTGAAGGTGGAaactttttattgtaattatttaaaatggcacTGTTCTACAAGCTGGTTATGTGACTCCTATTCCTGCTTATTTCTGCCTGTTAAACAAAGGCGGGGATCCTATGTGAATTACTCGTAACGTGCTctcgtctgtctgtctccttcaCCACACTCAGAACTTCGACTGTCTGGCGcttgttgatgacatcactgtatTACAGTGACATTAATAATTTGACTGTTTTActaaataatgcaaacattaaaTTCTTAACTCATGTTCAGTTTTCTTCTTGTTAGAGGACACCTTCCACAGATTTGTGGAATATggctttaatttaatcatttaatcagcggccagtgtttttttttgggtggaGAATGTGTCCTCAGAGAGTGATGTTGGAGGTTACGGACTGAAGTTTACAGCTAGGCCATATTATGTCCATTACAGAGATCATGACTGACCATTTCTCGGGGTGCATTTTGGATTGAAAGCCGGTCCCATAGGAACCACAAAATCATGGGTCTGTTTTTCGTAGGTGGGTAACTAGGTATAAACGTGGGATTTCTCATTCTCTGAAGTGAGAATGACCAGGACAACAAGTCCAGCATGTCCaacctgctccctggcaggTTCATTTAAAGTGACCTGGAATCTGAATGGATTTAATCTGCCCAACGATGACACGCGTTCCTAGCAGATCCATTAGATGTGGGATCAATGTTGATAAGGCAAGCTTTTTGGCGAGAAGTAATTCTTAGAGATTAAAGATCCTTTAAATCATACAGATGGATTATTtaggagggccaatttccagaggttgcatgggatggggggctgcagtagaaaattaacatccaatgaaaactaaatctgtcccaaatcatacc

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02895 RP-L24, MRPL24, rplX; large subunit ribosomal protein L24

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012488 True 1642 mRNA 0.48 5 19528472 19531808

Neighbor

gene id symbol gene type direction distance location
AMCG00012487 hdgf coding upstream 4790 19519106 ~ 19523682 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding upstream 27216 19496447 ~ 19501256 (+)
AMCG00012484 NA coding upstream 44926 19476382 ~ 19483546 (+)
AMCG00012483 NA coding upstream 60977 19461291 ~ 19467495 (+)
AMCG00012481 NA coding upstream 195045 19300813 ~ 19333427 (+)
AMCG00012486 NA coding downstream 5738 19537546 ~ 19541766 (+)
AMCG00012493 bcan,LOC106569870 coding downstream 26846 19558654 ~ 19581439 (+)
AMCG00012492 NA coding downstream 85930 19617738 ~ 19627369 (+)
AMCG00012495 NA coding downstream 231195 19763003 ~ 19787642 (+)
AMCG00012497 NA coding downstream 285711 19817519 ~ 19826263 (+)
G137177 NA non-coding upstream 19274 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 102934 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 132719 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 206213 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 291684 19234410 ~ 19236788 (+)
G137196 NA non-coding downstream 127938 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 257179 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 633475 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 638618 20170426 ~ 20237873 (+)
G137348 NA non-coding downstream 669743 20201551 ~ 20201804 (+)
AMCG00012480 NA other upstream 178270 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 289514 19237689 ~ 19238958 (+)
G137083 NA other upstream 354051 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 474643 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 983982 18539545 ~ 18544490 (+)
G137252 NA other downstream 283117 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 359359 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 714843 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 799273 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 869201 20401009 ~ 20422556 (+)

Expression


Co-expression Network