AMCG00012489 (s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298)


Basic Information

Item Value
gene id AMCG00012489
gene name s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19496447 ~ 19501256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012489
CGCAGTCTAGGATCTTCTGATATTGGATAGTCTATAACAAAGGATGGTTTTATGCATAATTGATCACGACCGTCTCTCGTGTGGGCTGGATTATGGGATTGACTGAACCACTTCAGGTAACCAGAGTAGTTGAAAATGGTGTCCCAACTGGAAACCGCAATGGAGAGCATGATCCGGGTTTTCCACCAGTATTCGGGGAAGGAGGGTGACAAGCTCAAACTGAGCAAGGCCGAGCTCAAGAGTCTTCTGCAAGGGGAGCTCAGCGACTTCCTGGCATTGAAAATGGTGTCCCAACTGGAAACCGCAATGGAGAGCATGATCCGGGTTTTCCACCAGTATTCGGGGAAGGAGGGTGACAAGCTCAAACTGAACAAGGCCGAGCTCAAGAGTCTTCTGCAAGGGGAGCTCAGCGACTTCCTGGCAGCTAGCAAGGACCCCCTAGTGGTGGATAAGATCATGAAGGACCTGGATGAGAACCGTGATGGTGAGGTGGACTTCCAGGAGTTTGTGATCTTGGTGGCTGCCCTGACTGTGGCCTGCAATGAGTTCTTTGAGGCGAGCATGAAGGACAAATGAACTCTTCCCCCATCTTGGTGCCTCAGCCTGGCCTTGTAGCCCAAACTTCCTTTCC

Function

symbol description
s100a1 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to act upstream of or within regulation of heart contraction. Predicted to be active in cytoplasm. Is expressed in several structures, including gill; gut; hematopoietic system; olfactory epithelium; and renal system. Orthologous to human S100A1 (S100 calcium binding protein A1).

NR:

description
PREDICTED: protein S100-A1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23758 S100A1; protein S100-A1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012489 True 631 mRNA 0.51 4 19496447 19501256

Neighbor

gene id symbol gene type direction distance location
AMCG00012484 NA coding upstream 12901 19476382 ~ 19483546 (+)
AMCG00012483 NA coding upstream 28952 19461291 ~ 19467495 (+)
AMCG00012481 NA coding upstream 163020 19300813 ~ 19333427 (+)
AMCG00012479 NA coding upstream 202351 19277716 ~ 19294096 (+)
AMCG00012476 NA coding upstream 223287 19271310 ~ 19273160 (+)
AMCG00012487 hdgf coding downstream 17850 19519106 ~ 19523682 (+)
AMCG00012488 NA coding downstream 27216 19528472 ~ 19531808 (+)
AMCG00012486 NA coding downstream 36290 19537546 ~ 19541766 (+)
AMCG00012493 bcan,LOC106569870 coding downstream 57398 19558654 ~ 19581439 (+)
AMCG00012492 NA coding downstream 116482 19617738 ~ 19627369 (+)
G137155 NA non-coding upstream 70909 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 100694 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 174188 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 259659 19234410 ~ 19236788 (+)
G137080 NA non-coding upstream 335304 19139125 ~ 19161143 (+)
G137177 NA non-coding downstream 3627 19504883 ~ 19509198 (+)
G137196 NA non-coding downstream 158490 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 287731 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 664027 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 669170 20170426 ~ 20237873 (+)
AMCG00012480 NA other upstream 146245 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 257489 19237689 ~ 19238958 (+)
G137083 NA other upstream 322026 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 442618 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 951957 18539545 ~ 18544490 (+)
G137252 NA other downstream 313669 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 389911 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 745395 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 829825 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 899753 20401009 ~ 20422556 (+)

Expression


Co-expression Network