AMCG00012492


Basic Information

Item Value
gene id AMCG00012492
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19617738 ~ 19627369 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012492
CTCGAAGGCACTGAAACCATGTCCAGCCACAAGACAAACATGCGGCTGAAGCTGCCCATCGTCTGCATCATCCTGGAGCTCATTCTGATCATCCTGTTTGGGACCCTCGTGGTCTATGACAAAGAGACAGACGCCAAGAAGTGGCACCAGGTGAAGGAGAAGCACAATGAGTCCGATGTCGAGAACGACTTCTACTACAGATACCCCAGTTTCCAGGACGTTCACGTGATGATCTTCGTCGGCTTCGGCTTCCTCATGACCTTCCTGAAGCGCTACGGCTTCGGCAGCGTGGGCTTCAACTTCCTGATCGCGTCTTTCTCCCTGCAGTGGGCCACGCTGATGCAGGGCTTCCTCCATGGGATGAAGGGGGGCAAGATCCACATCGGGGTGGAGAGTATGATCAACGCTGATTTCTGTACGGGCTCCGTGTTGATTTCCTTCGGCGCTGTGCTGGGGAAGACCAGTCCTGTGCAGCTGATGGTGATGGCGGTCTTTGAAGTCACCCTGTTTGCCGTCAATGAATTTGTCATTCTCTCTGTGCTTGAGGCGAAGGACGCCGGTGGCTCCATGACCATCCACACGTTCGGGGCCTACTTCGGCCTGGTGGTCACACGCATCCTTTTCAACTCTGCTGTGACGGCCCACGGGGATGACCAGCACAGGACAGTCATGAACACGTACTACTCGCTGGCCTCCTGCACCTTGGCCACCTTTGCGGTTTCCTCTCTGGTCAATGGGGAGGGCAAGCTGGACATGGTCCACATCCAGAACGCGGCGCTGGCGGGGGGCGTGGCGGTTGGCACGGCCGGGGAGATGATGTTGACACCCTTCGGCTCCATGATCGTGGGCTTCCTGGCCGGCACCATCTCCACACTGGGCTTCCGCTACCTCACCccCTTGCTGGAGAAGAAGCTAAAGATCCAGGACACCTGTGGCGTTCACAACCTCCACGGGATGCCAGGGATTCTGGGAGCCATCGTTGGAGCCATCACTGCCTCCGTGGCCACAGCGGACATCTACGGAGAGGGCATGCAGGATGTCTTCCCAGAAGTCTACTCTGGCGCCTCCACCGCCTCCTGGCAGGGCATACGGCAGGCAATCTCGCTGGCGGTGACCCTGGGCTTCGCTCTGGTGGGTGGCATCATCGTGGGATTCATCCTGAAGCTTCCCATTTTCGGATCTCCCCCCGACACCATCTGCTTCGAGGACGAGATCTACTGGGAGGTACGGCCTGTGCCAGAGGAAGATCAGGGTCATGAAGAGATGACCGCTATCCAAACCGAGGAGGTCGAGAAGGCGCTCAATGCTTGA

Function

GO: NA

KEGG:

id description
K06580 SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012492 True 1311 mRNA 0.58 10 19617738 19627369

Neighbor

gene id symbol gene type direction distance location
AMCG00012493 bcan,LOC106569870 coding upstream 36299 19558654 ~ 19581439 (+)
AMCG00012486 NA coding upstream 75972 19537546 ~ 19541766 (+)
AMCG00012488 NA coding upstream 85930 19528472 ~ 19531808 (+)
AMCG00012487 hdgf coding upstream 94056 19519106 ~ 19523682 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding upstream 116482 19496447 ~ 19501256 (+)
AMCG00012495 NA coding downstream 135634 19763003 ~ 19787642 (+)
AMCG00012497 NA coding downstream 190150 19817519 ~ 19826263 (+)
AMCG00012496 NA coding downstream 224784 19852153 ~ 19856703 (+)
AMCG00012511 NA coding downstream 505953 20133322 ~ 20134653 (+)
AMCG00012513 shc1 coding downstream 599029 20226398 ~ 20234055 (+)
G137177 NA non-coding upstream 108540 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 192200 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 221985 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 295479 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 380950 19234410 ~ 19236788 (+)
G137196 NA non-coding downstream 32377 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 161618 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 537914 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 543057 20170426 ~ 20237873 (+)
G137348 NA non-coding downstream 574182 20201551 ~ 20201804 (+)
AMCG00012480 NA other upstream 267536 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 378780 19237689 ~ 19238958 (+)
G137083 NA other upstream 443317 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 563909 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 1073248 18539545 ~ 18544490 (+)
G137252 NA other downstream 187556 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 263798 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 619282 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 703712 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 773640 20401009 ~ 20422556 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_07821062_07827997 RHBG coding CI01000027 null 7821062 ~ 7828092 (-)