AMCG00012493 (bcan,LOC106569870)


Basic Information

Item Value
gene id AMCG00012493
gene name bcan,LOC106569870
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19558654 ~ 19581439 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012493
ATGAACCGAGACGAGGTCAAGACCTGGAAAGGGAAAACCACAACATCGGAAATGGCCCTCCTGCTTCTGCTGTGTGCCATCTGTCCCATCATCCACGCATCGCCCCTGAACTCCGGCCTGGTCCCAGATGACATCCAGCTGCTGCAGGTGAGGATCCCCACGTACCCCCCTGCGGTCGCCACTCTGGGCGGGTCCCTGACCCTGCCCTGCCATGTCTCCCATGGTCAGCCCACCCCCCTCACCGCGGGCCGCCGGGCGGTGCTGACCGCCCCGCGCGTGAAGTGGACCGTCATCTCCGGGGGCCGCGAGACTGAAATCTTAGTGGCCAGGGGTCAGAGGGTGAAGGTCAGCGAGGCCTACAGGGACAGAGCCTCCCTGCCCAACTACCCCTCCTCCCCCGAAGACATCACCCTGCTTCTGGACTCACTCCGGTACAACGACTCTGGGATCTACCGCTGCGAGGTGCAGCAAGGCCTAGAGGACAACCATGACCTGGTCCGCgtcaaggtcaaagGTGTGGTTTTCCACTACCGGGACGCCTCCCGACGCTATGCCTACTCCTTCGGTGAAGCCCAGCAGGCTTGCGCAGACATAGGTGCCCACATCGCCAGCCCCGACCAGCTCCTGGCGGCCTACCACAGCGGCTACGAGCAGTGCGACGCGGGCTGGCTCGCAGACCAGACCGGTTGCTATGGTGACATGGACGGCTTTCCGGGCGTACGCAACTATGGCACCCAGGACACCCAGGAGCTCTACGATGTTTACTGCTACGTGGAGAACCTAGATGGGGAGGTGTTCCATGGCGATTCCCCATCCAAGCTGACCCTGGAGGAGGCCAAGGAATACTGCGCGGCGCGGGGGGCGGGCCTGGCCAGCACAGGGCAGCTGTACGCGGCCTGGAATGACGGTCTGGACCACTGCAGCCCCGGCTGGCTGGCGGACGGCAGCGTGCGGTATCCCATCGTCAGCCCCCGGGAGCGCTGTGGCGGCTCCCAGCCCGGGGTCAAGACGAGTTTAGGAAACACGGGCTGGAATAGAAATTTTAGAGAGCTGAAAAACAACGGAGGCAACGGGGTCTCCCACACCGAGTCCCCCATGGACTACCGTGCCACAGAGCCCGAGGATCTGGGCGATATCGTCACGCTGACAGACCCGCTGGAGGAGTTCGGCCTAGACCAGCACGGGGAGGAGTGGGAGAGCGAGGCCAGGGGCAGCTTCGACCAGTTCTCGGTCTTCGAGGATCCCATTGTGAGGGAGCAGGGCCTGGGGCAGCAAGGCCTACCACAGCTCTCTGTCACGGCTGTGGCCCAGGCAGAGTACCTTTACCCCACCACCTCAGAGAATGATATCACACCTGCCCCTGTGACTCAGTACCCCCAGTCTACAGATGCCACCTGGCACATTGTCCATGAGGGTAACCCCAAACACTACCAGCCAATGCCAGAGACCAACTTTGAGTTTCCAACCCCCTCCCACAAAGTATCTGGTGGCAATCCTAAACACTACCAACCCATGCCGGACACCAATACAGAATCCCACGAGGCAACAGGTGTAGAATCCTCAAGTGTTCTGGCCCCTTCTTCTAGAGAGTCGGGGGGCAATCCCAAGCACTACGCCCCTATGCCCGAGACAAATCTGCAGTCCGAGGAGCCCACACCACACTACGACACCTCGGTAGAAAATCCCAAGCATTATGAGCCCATGCCTGGATCGGAGTCGTACGACATGTCTGGAGGGAACCACAAGCACTATGTGGACATGCCAGAAACAAATATGGAGTCTGGTGTGACCACAGTGCATCATGGCCCCTCAGGAGATGTTCCTAAACAGTATGATGCTGTACCAGGGACAGGGAATGATTCTAGTTACCCTACCCCTTCGTCCGAAGAATCTGGGGGTGGTGCCAAGCACAATGATGCCATTGCCGGAGCCAGCGTGGAATCGTCAGTCTCTGCTGTCACCCTTCCACAGGAAACGGGAGTGGATATTTACCTTCCAAAGGCCACCCCCTTGCCTGACCTTGAGAGCACCCCTGTCGTAACCACACAGGAGGAGTCTGGAGACCTGAACGCCGCTTCCCAGATCCCAGAGCTGTCTGTGCCAGCAAGCAGCTGGGATAACGTGGGGGTCCAGCCTGATGGGGGGGTTTCATCCGTGGTGGAGTCTGGGGAGCATCCGGTCACCCATTACCCTGTGGACTTCGATGGCTCGGGACCCGTACAGCGCACCCACAGTTCTCAACATGGTGACAGCTCCACCCCTGAGCATTCTGGCTTGCCCTGGCCGGACTCCTCTGCTCCAAAGAACCAAGAGCAGGAGGCCAGTGGAGCGTCAGTGGAGATGCCGGTGCAGGCATCGACAGAGGCACCAGTGGACCTGGGCAGCCCTGTTAACCTGGGGTCATCACCCATTGAAGTGACTGAAAACATGGTCACTGTGACCCTGAAACCAGGCGCAAGTACAGAGGAGGCCAGTACTGCTCGACCGTCTGTGTCAGGCGAGCACGAGGAAGAACAGCCCAGCGGCATCCCAGTCACCCTCCTCACCTCCCCAACCCTGTTCACCCAGCCGACCCTGCCGTCCTCCCAGTGGTCTGCGGAGGCCAAAGCCAGCACCCCCAATGAGTTTGACACCCATGTTCCCGAGGCTAGTGTCCCATCCGGGCAGAAGCAGTCAGGGCTTGAGCACCACGAAGGTTCGGTGGATCTCGTGGGCTTGGACCGGACCCTTGATATTGTGTTCCAAACAGTGGCTCCTCCTGACGCCATCACCTCTGCCTTGGAGGGCAGCCTGGAGCTGGAGTCCGAGATCTCCCCGGCCGGACCCTTAGAGTCAGAGCCCTCTGGTGACCTCCTCAGCCCAGTCCAGGAGCCCACTTCCATTTCCGAAGAGATTCACCTGGACTCTGCAGAGGGCTCGGCGATCACGGACTCCCCGGATCTTCCCTACAGCACCGTGACACCCCTGCTGCTGGATTTCACCGTAGCAGCTTACAAGACATCTGCAACTTCCAGTGCGGACCTCTTGCCTCTTCCCTCCGGCACTGCCTCTGCCCATGGGGAGGACAGTGTGCTAAGCATTGGCAGCACAACCGAGCCTTCTACCACCCAAATAATGATCACCCTTTTGCCTGAGGAGACAGGCACGCCAACATGGGATTCCGATACACCCACTGTGCCCCAGGAATCCCGGATGGATTTGGAATACAGCGGGGAGCACCCTGCTTCTACTGAGGCTCACCTCCCAGAAGCCTCtgctgagcctgacctccttgaACCCACTGCCGCGGGATATCCCACAACCGCCACAGTGCTGTGGCCTCTTTCTACCCAGAGCCCTTCCACTTCTGCCCTGGGGCTGCCCACGTCCGAATCGACCACCCCAGTTTGGGAGACGGAAACCGAGACTACCAACACCCCCCCACCGCTGGTCGGCACTTCCCAGGCTGAGTATGAGCCCATGACGGAGGCTGGGCCTCGCACCCGGCAGCCCACACTACCTGCCTTGCCCACTGAAAGGGCAGTGCTAGGACGGGCGGCAAACATTTCAGTGGCAGCACTGGCCCATCATACACTGAAGGATCCAGGAATTGTGGGGGGGGAGGTGATTGCAGTGCTTGGCTACTCAGACAAGCCATTGATGCCGAATTCAGCCCTGATAAAAGGCTTTGGTGGGGTGTATGGAGTGGGGTACGGCCACAGCTTTAGGGTCACAAAGATTGGGGTGGCGAGCTCTGGCCCACGTCTAGTGTGCAGCGTGCTGGTGGGAGACGCGGCATATTCCCGACGCGTTCCCCCTCCACCTCCACTGGCAGGGCTGTGCCAGTATTGCCCCCACTGTCACTGTGTTTCAGACGCCTGCCTGGAGAACCCGTGTGCCAATGGGGGCACCTGCGTGGAGGATGGGGTGTCAACCAAGTGCCTGTGTCTGCCTACCTATGGAGGGGACCTCTGCCAGACTGACCTGGAGCACTGCGAGGCGGGCTGGGAGAAGTTCCACGGCTTCTGCTATAAGCACTTCAGTAATCGCCAGGGCTGGGAGGTGGCAGAGCAGCACTGCAGGATGTGTGGCGGGCACCTGGTCTCCATCATGACCCCCGAGGAGCAGGACTTCATCAACAatAAATACAAGGAGTACCAGTGGATGGGGCTGAACGATAAAACCATTGAGGGGGACTTCCGCTGGTCTGACGGAAACCCGCTGCTCTACGAGAACTGGTACCGTGGCCAACCCGATAGCTACTTCCTGTCTGGGGAGGACTGCGTGGTGATGGTGTGGCATGATGGAGGACGCTGGAGTGACGTGCCCTGTAACTACCACTTGTCCTACACTTGCAAGAAAGGCACCTCGTCGTGTGGAAAGCCCCCCCAGGTGGAGAACGCAGGGACGTTCGGGAAGCCACGCCAGCGCTACGAGACCAACTCAGTGGTGCGCTACCACTGCGCCCAGGGCTTCCTGCAGAGACAGAACCCCCTGGTCAAGTGCCTACCCAACGGCAGATGGGAGGAGCCACAGATTGTCTGCATCCCGGGTGTCGGGCCTTATAAGGTCAACTGCACCGAGGAAGCGGGGGACGAAGAGCAGGACCCCGACAAAAAGAAGTACAAGAAGGCGTGCTCTGGAGTGGACTCGGATGGGAGCAAAGGAGAGGACGAGACCTCCCAGAGCgagaatgagaatgagaatgagagcgagagcgagagagagagtgagagtgagagtgagagcgagagcgagCTGGACCATGAGGAAGAGTGCTCCAGCTGTTCCGACAACAGCAATCCGGCTCCCTCTTCCGAGACGATGTCGGAAAGCAACTCAAGCCTCAGCTCCTAA

Function

symbol description
bcan Predicted to enable carbohydrate binding activity and hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in VeLD and forebrain. Orthologous to human BCAN (brevican).

NR:

description
PREDICTED: brevican core protein-like isoform X3

GO: NA

KEGG:

id description
K06795 BCAN; brevican

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012493 True 4836 mRNA 0.60 17 19558654 19581439

Neighbor

gene id symbol gene type direction distance location
AMCG00012486 NA coding upstream 16888 19537546 ~ 19541766 (+)
AMCG00012488 NA coding upstream 26846 19528472 ~ 19531808 (+)
AMCG00012487 hdgf coding upstream 34972 19519106 ~ 19523682 (+)
AMCG00012489 s100a1,LOC108441918,LOC108272706,LOC107587912,LOC105028680,LOC107689908,LOC107598020,LOC107663298 coding upstream 57398 19496447 ~ 19501256 (+)
AMCG00012484 NA coding upstream 75108 19476382 ~ 19483546 (+)
AMCG00012492 NA coding downstream 36299 19617738 ~ 19627369 (+)
AMCG00012495 NA coding downstream 181564 19763003 ~ 19787642 (+)
AMCG00012497 NA coding downstream 236080 19817519 ~ 19826263 (+)
AMCG00012496 NA coding downstream 270714 19852153 ~ 19856703 (+)
AMCG00012511 NA coding downstream 551883 20133322 ~ 20134653 (+)
G137177 NA non-coding upstream 49456 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 133116 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 162901 19361344 ~ 19395753 (+)
G137130 NA non-coding upstream 236395 19322006 ~ 19322259 (+)
G137110 NA non-coding upstream 321866 19234410 ~ 19236788 (+)
G137196 NA non-coding downstream 78307 19659746 ~ 19689785 (+)
G137242 NA non-coding downstream 207548 19788987 ~ 19793532 (+)
G137332 NA non-coding downstream 583844 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 588987 20170426 ~ 20237873 (+)
G137348 NA non-coding downstream 620112 20201551 ~ 20201804 (+)
AMCG00012480 NA other upstream 208452 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 319696 19237689 ~ 19238958 (+)
G137083 NA other upstream 384233 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 504825 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 1014164 18539545 ~ 18544490 (+)
G137252 NA other downstream 233486 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 309728 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 665212 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 749642 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 819570 20401009 ~ 20422556 (+)

Expression


Co-expression Network