AMCG00012496


Basic Information

Item Value
gene id AMCG00012496
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19852153 ~ 19856703 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012496
caacacTCTACTTACAAGTCCGTAGCCCTGAGCAGCACTCCACACTGCTGATGTGCTCAGATGTTTCTCCACAGCTGCCAGAGGACTGACCTCAGCTGCCGGTCTGCGCAGTTtgttcccatcactcactctgcttcctcctctccccctgTCCCTGCTCTCCCTGCAGGTGCCTGTGCTGGTGTTTGTGCCCCGGTTTGCTTCGCGATGGCGGGGAGAGCCCGGGGGCGAGGCCGGGGGCAGATGAATTTCAACATGGAGGCTGTGGGCATCTGGAAAGGGGACCTCCTGCCCCCTTCCACCCTGCAGCCCACTCCACTGTTCCCCCCGATGGAGTACAAGCCTGTGCCCCTGCAGACGGGCGAAGAGGCGGAGTACATGCTGGCACTGAAACAGGAGCTGCGGGGGGCCATGAAGAACCTGCCCTACTTCGTGAGGCCCGCCGCCCCCAAGAAAGACATAGAGCGCTACTCTGACAAGTACCAGAGCTCGGAGCCCACGGACAACACCATCGAGTGGAACCCAGactGGAAACGGCTGCCCAGAGAGCTGCGCATCAGAGTACGGAAGCCCCTAAAGGACAAGCCTCCCGCCGCTCCCAAGCGCAGTCAGCACACCCGGGTGGACAAGGAGGAAATCATCCGCAAACTGGAGGTGAGGgattgttttttccccacgCTCCAGACCCTGGAGAAGAAGGAGCAGGAGGTGAGctcagaggaagaggaggaggagaagaagcaggaggaggaagagcaggagaatgAGGAAGAGTACGACGAGGAGGAGTTTGAGGAGGAGACGGACTACATCATGTCCTACTTTGATAACGGGGAGGACTTTGGGGCGGACAGCGACGACAACATGGATGAAGCCATCTACTGAGGGGAGCCAGAGAGACAGGGACCCGGGACCGGGGCGCAGGGGGACACAGCACTTCACGGAGGGACCTGGAATAGTCTGTCTGGGACAGAGAGACACCTGGGGGTGGAACACAGAGGTGCAGAAGGCAACACTGTCCCCGGATACACAGTCGcacttatttatcaatgtttTAGGTTCACGTTGGtggagtaaaaaaacaacaaaaaaaaaggacacGAGCGTTTCACCCCAACGGACTTTGTGGGGGGGTTGACCATTTTGGCGCGAGGGGACAGGGGTGTGAAACCTCCTGTCATCTCTCTCTTCAGTGTTGCTGAGATCCTCTTGCACTGAGGGACCAGAGTGCTGTTCTATCACCCAGAACAGGTTCCTGACAgaattttacataaaaatgaaagaaaaggacaatatttttttattttttgtaacggTTTTAtcgtgtgttttttaaatggaagtTGCTGTTTTAGGAAGTGTGGTTTTAAGGTCGTTTTAAAGTTTGTTAAACTCCGAGAGATTCTGATGTCATTCTCAGTGACTACAATGCTGCCACCCGCCACCAGGGGGAGCTGCCGtccttgttattgttttaaattgttcttcTGCCGATGTTGATATTTTGGGAGTCTGTGGCGCATATCAATGTAAAC

Function

GO: NA

KEGG:

id description
K03024 RPC7, POLR3G; DNA-directed RNA polymerase III subunit RPC7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012496 True 1535 mRNA 0.54 7 19852153 19856703

Neighbor

gene id symbol gene type direction distance location
AMCG00012497 NA coding upstream 25890 19817519 ~ 19826263 (+)
AMCG00012495 NA coding upstream 64511 19763003 ~ 19787642 (+)
AMCG00012492 NA coding upstream 224784 19617738 ~ 19627369 (+)
AMCG00012493 bcan,LOC106569870 coding upstream 270714 19558654 ~ 19581439 (+)
AMCG00012486 NA coding upstream 310387 19537546 ~ 19541766 (+)
AMCG00012511 NA coding downstream 276619 20133322 ~ 20134653 (+)
AMCG00012513 shc1 coding downstream 369695 20226398 ~ 20234055 (+)
AMCG00012514 NA coding downstream 383131 20239834 ~ 20240031 (+)
AMCG00012517 NA coding downstream 426546 20283249 ~ 20291367 (+)
AMCG00012518 LOC107669979 coding downstream 444123 20300826 ~ 20327286 (+)
G137242 NA non-coding upstream 58621 19788987 ~ 19793532 (+)
G137196 NA non-coding upstream 162368 19659746 ~ 19689785 (+)
G137177 NA non-coding upstream 342955 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 426615 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 456400 19361344 ~ 19395753 (+)
G137332 NA non-coding downstream 308580 20165283 ~ 20228036 (+)
G137337 NA non-coding downstream 313723 20170426 ~ 20237873 (+)
G137348 NA non-coding downstream 344848 20201551 ~ 20201804 (+)
G137364 NA non-coding downstream 464903 20321606 ~ 20328824 (+)
G137494 NA non-coding downstream 677049 20533752 ~ 20533959 (+)
G137252 NA other upstream 36536 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 501951 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 613195 19237689 ~ 19238958 (+)
G137083 NA other upstream 677732 19169748 ~ 19174421 (+)
AMCG00012471 NA other upstream 798324 19047497 ~ 19053829 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 34464 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 389948 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 474378 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 544306 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 574222 20430925 ~ 20445287 (+)

Expression


Co-expression Network