AMCG00012500 (txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569)


Basic Information

Item Value
gene id AMCG00012500
gene name txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19891143 ~ 19895768 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012500
GTGCATTCGCTGCCTTGTTTTCCTGCATGAGGTGAACACGCGTCGCTCTCGGCCGCTGATTGGCCCGGAGCGACACAAACAACCCGGCTCGGCCAATGGGAGCGCTGTACACGCGTGGAGCCGCGCTGTGCACTCCGCCTGCACATGGACAGCAGAACCCGCTCCGCAGCGGCGCTGATTCACTAGCTAGCGCCCGGGGTATAAAAGCCAGCCTTCCTGTTTACACCCTCTAGAGTTACAGGCAGATGGTGGAGCACGGAGGCACAGACTACAGCAGACTTCACAAACCAGTGCGATAGAGATCGTAGGGTTTTTAGATCACAActgcaaaaaaagaaagccatCCCCGTTCAAACTCGCACACACCGCTTTGAATTAGTTTCCACTGAATCCGGATTTACACTCCAACAAAGCCTGCAGTCATGGTGGTGATGACCAAGAAACTGAAGACCTTCGAGGTGGTCTTCAGCGACCCTAGCAAGGCGTACTACTCCAGCGGAGACAAAGTGGCCGGCagggtggtggtggaggtggcCGAAGTGACCCGGGTGTCCGCACTGCGCTTCCTGGGCATCGGCTGCGCCCGGGTGGAGTACCCGAAGGGCAAGCAGCGCTGCCATGAGGAGATGGACTACCTGCGCTACGAGGACACGCTGCGGCTGGACGAGCAGCCCACCGGTTTCGAGCAGCTGATGCGTAGACTGGCACAAGCGCTGGCCTCCAAAGTAAACGAGCCCCCTGTCACTGGGTCCAGGGCAGCCCTTATTTCACTGAAGCGCAGTGGCAGCGGCCGAGGCCTGGGCGCCGGAGGGGGCGCTGTGGAGCAGCAGCGCAGGGGTGAATTACAGCCTGCTGTGCCAGGTCAGGGTGTGCTAGCAGGGGATTCCCTGGGCACGGATGCCAGGGGTGATGGCACGGAGACAAATGGAGCGGGGTTACTGTACTTGGCAGGCGGACATTCAGCCTCTGGCCTAGTTGGGAGACGCATGCAGGAGGTCTTCAATAAGGATGGCTCGGTGACGCTCAGACCAGGCAACAAGTACGAGTACATGTTTGGGTTCGAGCTGCCTCAGCCAGGGCAGATGGTAACGTCCTACAAGGGCAAGTTTGGCAGCGTGGAGTACTACGTTAAGGCCCTGCTGGAGAGACCCTCCCAGCCGGCCCTGGAAGTGAAGAAGAACTTCGATGTGGTTGAGCCCTTGGATGTCAACACCCCTGACCTCATGTCTCCAGCTGCTGGGACCAAAGAGAAGAAAGTGACCTGCATGTTCATTCCTGACGGGCAAGTGTCCCTGAACGCCAAGATTGACCGCAAGGGCTTCTGTGAAGGCGAGGATATCTGCATCGACGCCAAGTTCGAGAACACCTGTTCCCGCATCGTGGTACCCAAGGCAGCCATCGTGGCCAAGCACACCTACCAGGCCAACGGGCGCACCAAAGTCTTCCAGCAGAAGCTGTCGTCCGTCCGTGGCAACCACATCATCTCGGGCATGTGCGACGCCTGGCAGGGCAAGAGCATCCGGGTGCCCAAGATCAAGCCCTCCATCCTGGGCTGCAACATCATCCGTGTGGAGTACGCCCTCATGATCTACGTCCACATCCCCGGCAGCGACAAACTGGTGATGGAGCTGCCCCTCGTGATCGGCACTGTCCCCTACAATGGCCTTAGCAGCCGCACCAACAGCATGACCAGCCAGGACGGCAGCACGAGCTCCAACAGCTGGGTGTCCCTGCGCATGCCCTCAGCGCCCCCCAGCTACTGCGACATCGCCCGTGACTGCCGCCTGGACACACCCCTCACCCCGCTGCTGGACGACTATGACGGCGGCGACAGCCCCCTCTTCATGAACGTCCCCCAGTTCGAGTTCCCGCCTCCTCCTGCGTACTCCGAGgTGAACCAGCAGTTTAACGGCAACATGATGGCCGTCAGCCCCCCGTGCTAGAGAGACATGCCGCAGATTCCTCAGTGACTCTCGCCTagcgttttatttttcttccgcATTTGAATGGTAAAAAAAGGGGGACCGCCAACGAGGAGGAAGAGATGGTTTGGAAATCTCGACTGAGGACGAGGGCTTCTCTGCGAGGCCGGCCTGGATCGATGGATCAGATGAGAAAGGTGGCGTTCCAGGCCGGGAAAGAGGGTGAAAACCAGCCCCTGCAAGCTTAGTGCCTACACTTGTCAGTCTTTGTCTCTCCATGCAGACTTGAGCTGAACGTCCTATAGATTTATATAGGCCTATGCGTTTTTTCTTGGTGCTCTTCAAAGTTCCAGCCCTCCAAAGAGTCGTCGCGCACCACACCCACTGGGGTACTGTCCTGGTGTCGGCCTGTTCTGTCCGACCTTGTGTTTTAAAGACTTTGTAAGTTGGATAACTCGCAACATAGCCATCTTAATAGGGGCAGTTGACTAGAACACTCCTACAGGCTTGCGGCCTTTGCAAGCCCCCAAAAGCTTTCGGCTTAATTTGGGTCACCCTGAAACCCCACACACACTACTTTCTGGATCCGTCCGGTTTGCAGTCTTAGTCATTCCCAAATACCTGATGTCAGTGGGGTGGGACTTTCAGTAAAGGAACCACTTTTATATTTCTCTCCTCAAAGAAGGAGTGTGCAACACCCTGTTCTTGCAGAAGAGTAAAGAAAAATGACTACTATTATCCGTGATTTGTATTTGAGATCTTCTGCATGTCTGTCTGGTCTTTGCTATGCATTTCTTCTGAGGATTGTAACATGCAGACTTGATTGTATTGAAACTTGCTGTACATCAGTGTTTTTCAACTGTGATATTGCACTTTCTATGGATGCAAACTTGCTCTATAACTGCCTAcaggaaagttttttttaaattgtcttcCGGATTACCTGTGATCTTCATACAACCATGGGTTGAGTCTTTCCGCTTGTTAGAGGTTGTCCCCGATTTTGAGCACAAGAACTCCAACTGCATTCAGATCAAACCTAGTTAATTGCTACcgaattatttttttaaatctgctcgACTTTTGGATCGTGAGTTTAGTCACGTCAACTTTTCTGACACTACCAGTGCCAAATGCAGCCCTGTTCTTGGGCTCAAACCCCTGACATTGGTTCTAACATCAGGAATTGcaccttatttttattttgtgattaataGAACTTTCAAGGGCTACTCCTGAACAGCATTTCATTTGTGGGGTTCTTCAACAAGAACAATTTACTATTTCTTCAAGCTACAATGTTCTATTGTTTGACTTTTGTAaaagtgtacatatatatttttttttatatcttcgaattgcaaaaagtattgtttgtatttgtatatggaATCCTATgggttcgttttttttttttgttttgtttttttt

Function

symbol description
txnipa Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; endocrine system; mesoderm; and nervous system. Orthologous to human TXNIP (thioredoxin interacting protein).
txnip Enables ubiquitin protein ligase binding activity. Involved in cellular response to tumor cell; keratinocyte differentiation; and negative regulation of cell division. Located in cytoplasm.

NR:

description
PREDICTED: thioredoxin-interacting protein-like

GO: NA

KEGG:

id description
K20910 TXNIP; thioredoxin-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012500 True 3353 mRNA 0.52 9 19891143 19895768

Neighbor

gene id symbol gene type direction distance location
AMCG00012498 ankrd34a,LOC106605449,LOC106580187 coding downstream 60988 19828500 ~ 19830155 (-)
AMCG00012499 NA coding downstream 77313 19803626 ~ 19813830 (-)
AMCG00012494 NA coding downstream 300879 19586764 ~ 19590264 (-)
AMCG00012491 NA coding downstream 354038 19533480 ~ 19537105 (-)
AMCG00012490 LOC107577543,LOC107716568 coding downstream 373395 19510237 ~ 19517748 (-)
AMCG00012502 NA coding upstream 20044 19915812 ~ 19931090 (-)
AMCG00012501 NA coding upstream 39091 19934859 ~ 19947563 (-)
AMCG00012505 NA coding upstream 131579 20027347 ~ 20033065 (-)
AMCG00012504 NA coding upstream 141167 20036935 ~ 20060267 (-)
AMCG00012506 NA coding upstream 207546 20103314 ~ 20107248 (-)
G137248 NA non-coding downstream 117057 19768128 ~ 19774086 (-)
G137214 NA non-coding downstream 256076 19504884 ~ 19635067 (-)
G137232 NA non-coding downstream 268698 19617527 ~ 19622445 (-)
G137094 NA non-coding downstream 709785 19179139 ~ 19181358 (-)
G137014 NA non-coding downstream 964800 18925545 ~ 18926343 (-)
G137270 NA non-coding upstream 4438 19900206 ~ 19900440 (-)
G137384 NA non-coding upstream 271307 20167075 ~ 20227959 (-)
G137389 NA non-coding upstream 305796 20201564 ~ 20201895 (-)
G137390 NA non-coding upstream 313799 20209567 ~ 20212312 (-)
G137449 NA non-coding upstream 480675 20376443 ~ 20377953 (-)
G137246 NA other downstream 97612 19714162 ~ 19793531 (-)
G137199 NA other downstream 383749 19441927 ~ 19507394 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 847694 19032603 ~ 19043449 (-)
AMCG00012467 NA other downstream 957942 18927379 ~ 18933201 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other downstream 1354018 18516836 ~ 18537125 (-)
AMCG00012503 NA other upstream 7338 19903106 ~ 19910378 (-)
G137408 NA other upstream 365234 20261002 ~ 20270864 (-)
G137608 NA other upstream 1139395 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 1144321 21040089 ~ 21042443 (-)
AMCG00012559 NA other upstream 1537896 21433664 ~ 21635426 (-)

Expression


Co-expression Network