AMCG00012506


Basic Information

Item Value
gene id AMCG00012506
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20103314 ~ 20107248 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012506
GGAGGAAGCAGTCGGTCAGCAGCACGGAAGTAAACAGTTCCACTTCCCGTCAGCCTGTAACTAACTCGGAGAGCTACCGACATGAATGGACTTTCTCTTTTAGATAAGAAAGGGGAGTGCACTCGGGTATGGTTAGTCTCAAATATTAActctatatatgtgtatttgaaTCCTATGTGTTTATGTGACTGACGGCTCCATCGACGGAGAGCGAGAAGGGTCATGTATAGTTCATTAGTTgtcagtatacagtatacagtatagtGTTTGCGCAATAAAGGACCGTGTCCGTCATTGAAAGTTAATGACACAACgggatgaaaataaatgtacttaatCTGGATTGAAAAGTGCAGTGGTTGCGTCTTTATCACAGATTTtggcagttctgcacagatcggCAACTTTGAACCAGTTTTATGCAATTTGCAGGTCtgcgcaaaactgcggaaatctgctcTACAGAAACCGAAATATCGTTAGCAGTGGTACAATGTCTGTCTTGGCACGATAAACAGATTTCACTTTAGTCGTggtcaattaaatgtatagagGTTGCGTTCTTGTAACCCAGACTTCATTAGTTCTGtgcaatgggatcagtggaaatcagcagatctgcgcagaacttaGGGACCGCAACTCTTTTAATGGGTCACCGTTGCCAGTGAGTGTCAACGTGTCTGTGCGCAGCAGCGGGCGGGAGTGCGGGCCATGGAGGCTGTGAAGAAGGTGCTGGTCTACCTGTCCGAGGGAAACTCGGTCCCTCAGTGCGCTCGCTTTGTGCAGAGCATCACGGGACACTTCCCAGGCTGCCATGACGACCAGGTGGAGGTGGGCTGCACGCTGGAGAGGAACTGCTTCGTGGTGTCGGCGGGCGAGAGGGAGGGCGCCACCAGGGTGCTGCTCAGGAGAGCTCCCTTCTGCTCCTTCAAGCACCTGTCACTCTCCGAGGCCGCCACCCTCCCACAGGACGTCCAGAACCGAGGTGTGGACGTAGGCGTGGCCATCCTGCTGCAGACGGCCGATCAGAAGGTGTTGCTGACGCGGCGGGCGGCCGGCCTGAGGATCTTCCCCAACGTTTGGGTGCCACCAGGGGGTCACGTGGAGCTGGGCGAAGAGGTAGCAACTCCGTCTCCGACCGCAGCCCCTGCTGGGACAGGTCTGGTGTTGGGCTGCTCAGTCCCACCCCTCCAGAGCGTATCAGCGTACCCCCCCATGCTGACCAGAGGGCTGCCACGGCGACACCACATCGTCATCTACATGCTCCTGCGCACCTGCCACACTCACCTGCAACTCCAGTCCAGGCTGCACCCTGACCCCGGGGAGGTCAGTGGCTGTGTGTGGTTGGACACTGCGCTGGTCAGGGCTATTGTGTCTGCTGTGGACGGATCAGAACATTCTGGGACAGCACCACCTGACCTGCCCCTGACAGTCAGCATGTCGGAGGTATCCCTGGAGGGCAGTGTGAGTCAGTCAGCGTTGCCGGTGTCGGTGCTGTTGGGACGGGCTCCGGCATGGGGCGAGGACGTGGAGCGGGTCAGTACCGGCACCAAGTTCGCTCTGGAGCTGTGGCTGGACACACCGAGCACACAGGAGTCCTGCAGGTCAGACACTCCCCTGGACGCCCCCTGATCCCGGCCCACCCAACATCCTGGAGCCCAGCCCCTCCGTTTCCGTCAGTCAGACttctgttgattttttttaaattaaataaaagcaaatatcTGATAAAAGCTGATGTAGTAATGAATGACCACTACCGCCTACCATTTAAAATTCTGTGGATGTTCTATTGAGATATTTACATAATCTCTTTCCGTGTTAAAAATATAGGATGTTGGCTTTATAATGACACTTGCCTGTGATGCAGTTTGCTGTGTTGTCCACAAGGGGGTAAGccatgataataaaataagaggACTCGCCTTTGGGTGTGGACAAGGTAATATGTGTCCGGtttaaacaaaactgttctTGGCCAGCCTGACTATGGTGTACGAGGACATTGTGTACAAACAGGTGACCGGCCTAGATAATAATACTGGTTCAAGTAAAGTTCAGTACAGtccagtgtcttctggtttccAGAATTATTACTATAATTGCTGTGGGTGATAAACATTCTCCGTCACATCATACAAATATTGTACTGTAAGCTACTCTTGTCATgcctgtgtttcttttctttcgtGATTGGTTGACAAATTAAACTCTGTATCCAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012506 True 2228 mRNA 0.51 7 20103314 20107248

Neighbor

gene id symbol gene type direction distance location
AMCG00012504 NA coding downstream 43047 20036935 ~ 20060267 (-)
AMCG00012505 NA coding downstream 70249 20027347 ~ 20033065 (-)
AMCG00012501 NA coding downstream 155751 19934859 ~ 19947563 (-)
AMCG00012502 NA coding downstream 172224 19915812 ~ 19931090 (-)
AMCG00012500 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding downstream 207546 19891143 ~ 19895768 (-)
AMCG00012510 NA coding upstream 914 20108162 ~ 20113136 (-)
AMCG00012509 NA coding upstream 6646 20113894 ~ 20118565 (-)
AMCG00012508 paqr6,LOC107728479,LOC107688246 coding upstream 40529 20147777 ~ 20157212 (-)
AMCG00012507 smg5 coding upstream 60907 20168155 ~ 20178964 (-)
AMCG00012520 NA coding upstream 185482 20292730 ~ 20297061 (-)
G137270 NA non-coding downstream 202874 19900206 ~ 19900440 (-)
G137248 NA non-coding downstream 329228 19768128 ~ 19774086 (-)
G137214 NA non-coding downstream 468247 19504884 ~ 19635067 (-)
G137232 NA non-coding downstream 480869 19617527 ~ 19622445 (-)
G137094 NA non-coding downstream 921956 19179139 ~ 19181358 (-)
G137384 NA non-coding upstream 59827 20167075 ~ 20227959 (-)
G137389 NA non-coding upstream 94316 20201564 ~ 20201895 (-)
G137390 NA non-coding upstream 102319 20209567 ~ 20212312 (-)
G137449 NA non-coding upstream 269195 20376443 ~ 20377953 (-)
G137472 NA non-coding upstream 316139 20423387 ~ 20423680 (-)
AMCG00012503 NA other downstream 192936 19903106 ~ 19910378 (-)
G137246 NA other downstream 309783 19714162 ~ 19793531 (-)
G137199 NA other downstream 595920 19441927 ~ 19507394 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 1059865 19032603 ~ 19043449 (-)
AMCG00012467 NA other downstream 1170113 18927379 ~ 18933201 (-)
G137408 NA other upstream 153754 20261002 ~ 20270864 (-)
G137608 NA other upstream 927915 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 932841 21040089 ~ 21042443 (-)
AMCG00012559 NA other upstream 1326416 21433664 ~ 21635426 (-)
AMCG00012556 NA other upstream 1386979 21494227 ~ 21502199 (-)

Expression


Co-expression Network