AMCG00012512


Basic Information

Item Value
gene id AMCG00012512
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20246651 ~ 20270919 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012512
ATGCACAGTGGGACAGAGTCGGGGGACCGCAGGGGGCCTCTGGACTACGGGGTCCAGATCCGCTTCATCAATGACCTGAATGagagtggtgggggtggggggcggcgTGGGGCCGGGGGAGGAGGTGTcccgccctcctcctcctcctcctcctcatatGGGGTGGCAGTCCGGGTGCAGGGCATCGCAGGGCATCCTTACGTGGTCctgaaggagggagagaaagggggatCGCAGGAGAAAATGGGGGGCACCCGCCCACCCCTTGCTAACCCCCCATTCTATGGCAGCCTCCCCCGTAACCACAGCACCCAGGGGCTCCCCGATAACCCCTATGCAGACATCACCTCTGGGTCTCAGCCTGGCCTCCGCAGGGCCCACTCCCAGGGCTCCATCCTGGACAGAGACAGTGATTTCCCCAGTGAGGCAGTGGGGCCAGACACCCCACATCGCCCTCCTGGAGATGGGCGGTCAGGGAGCTACGGGGCACTGGATGGAGGGGGAGGTGGCAGGAGAGActgggagagggacagagtCGTGCCCAAAGTGGACACCCCCCCAGAGTCCTGCACCACCCCAAGTGGATACAGCAACGGGGGGGGCCGGGTGGACAACAGCACCTGGGGGAGGCGgaagcagctgcagcagcaccaCAACGGATCCCTGGACTCCTtccccgcccccccgccccctgtcAGCCTGCCTGAGGAGGCCCCTGCCCACACCGTGGACCGAGGGTCGTTGGCCCCCATCGACCGGCTGATCAGTAAATtcgatgggggtgggggtggcgggCAGGTCAGGGGGCGCCCAGGTTCGAGGGGCAGGCTGTCCTCGGAGGAGAGGAGGCGCTCTCGGAGTGTGGACGGGCACCTAGGTCCGGGGACAGCATCAGCagaggacagacagatggacaccAGGGCAGGGGGCAGGGTCACAGGCTCCCCTTCTTCCACCTCCTCTTCGTACTCTTCGGTCAGCCGCCCCCCCCCTGCTGCCCCCACCACGAcctcctccccttccctctcctccccctATAATGCAGCCAGCTTGAGGCGGAACTCTGGCTCAGTCGCCAAAGTAGCGGCCTTCGggtccaccaccaccaccacctcctaCTCCTCGCCTTTAGCCTctgcccccgcccccaccccagCCCCAGCCCGCGAGTGGTCCACAGAGAGGACTGTTCTCAAGGAGACGACGGCCAAGGTTCAGGCAGATGCACCGACAAAGGTGACGCCCGACCTGCTGAGAGAccagggtcagagTGAGAGTGAGCTGGCCATCAGGCGGAAAACCAGTCTTGTCTTTGAGAAGATCCAGGGCTTAAAGAGTGGTTTCTCACAGGCAGAGCTTCACTCAGCGGAGGAGCTGGAGAGGAAGGTGCAGGAGCTCCAGCACAGCCTCACCCAGGAGAGGAAGAAGCAGCAGAGTGGAGACCCCGCCCTGAAGGCAGAGCTGGAGGATTGTCTGGATGAGAACTTGCAGCTCCAGGAGCAGCTGGACCGGAAGAAGAACGAGCTGCACCAGACCCACACTGAGCTGACCCAGCTGCGCATGGACCGCGAGGCGGCGGAGTCTCGGGTTCGAGACCTGGAGGACCAGCTGGCCGGCCTGCAGGAGGAGCTGCGCAGAGAGAGCGACTCCTCAACCGAGAGGGACACCCTGCAGACGGAGCTGATGACCCTGCGGGCGGAGCTGGCAGAGGCGGGGCTGCTGAGGCAGAGGCAGGAGGAGGCCCTGAGGCAGCGGGAGCGCGAGCTGACCGCCCTGAAGGGAGCACTGAAGGAGGAGGTATCCGGCCACGATCGCGAGATGGACACGCTGCGGCAGCAGTACCAGGCGGACATGGACCGCCTGCGCAGCAACATGGAGGAGGTCTCTCGGTCCCAGCAGTCTGTAGAGGTGGAGAGGCAGCGGGTGAACACGGCAGTGCGCTCCCTGCAGAAGCAGCTGGACGAGAGCAGTGATGAGATCGCCCACTGGAGGGAGCAGTTCGACCGGGCCAAGGAGGAGCTGCGCAGCACCAAGCAAGAGAAGGGAACAGAGCTGACGTCCATCAGGAAAAACACTCTCCAGCAGGTGACGGAGCATGAGAAGGAGATTGACAATCTGCGGGACAAACAccacagggagagggaggaccTGATGAGGTCACTGGAACAGACCAAGCAGACTATTAATCTGCATTACATGTTCACCCCCCCATCTCCCCAGGCGGCAGTGCATGTGGAAGGGGTGGAGCTGCGGGGGGTGCGGGAGGAGGCGGAGTCTCTGCGGGACAGGGTGGGGCATCTGGAGCGCCAGGTGGCCGAGCACAGGGACCACGCCCAGCAGCTGGAGGAACAGCTGGAGAGACTGGCCGACAAGAACAGCAGGCTGGAGGCGGAGCGGGCAAGGCTACAAGCCTCTCTGGAGCAGGCGATGGAGGTATCGGAGGCCTTGGAGACAGAGAAGCGGTCCCTGGGCGCCCGACTGGAAGAGGCCCAGCGTGGGGTGGCCAGACTGGgccaagagagagagcagctggCCCAGCGGCTACAGGAGGAGAGCCAGCAGAGGGAGCAGTTGCGCAGGGGCAAGAGCAACCTGGAGGAGCAGAAGAGGCTGCTGGACAGAGCACTGGACAAACTCAACAAGGAgATGGACCAGATGACGGCTGAGTCGAGCGGGTCGGTGGTGGCGCTGCAGTCCCAGTTGGACGAGTTCCGGGAGAAGTCCCGGCGGGAGCTGCAGGAGGCCCAGCGCAGCAGCAAGGATAGGCTGGGAGAGTTGGAGAGAGTGCAGGCCACGCAGCATGCCCTGCAGGacgaggtGTCTCGTCTCAAGAAGGAGCTGCAGGTGGCAATAGAGGAGAGGGACAGTGCTGCGCTGGACAAGGAACTGCTGACCAACCGCCTGAAGCACCTTGAGGGCGAGCTGGAGGCCAAGAAGACCTCCCACACTGACCGCTCCCGAGAGGTCAGGGCCCTGGAGGACAAGGTGAAGCGCTTGGAGTTGGAGCTGGACGAGGAACGGACCAGCGCAGAGCTGCTGACCGAGCGCATCAGCCGCAGTCGAGACCAGattGACCAGCTGCGCTCAGAGCTGATGCAAGAAAGGTCATCCAAGCAGGACCTGGAGCTGGATAAGAACGCCATGGAGCGACAGATGAAGGAGCTGCGAGGTAGGCTGTCAGCCCTGGAGGGGCAGCAGAGGCCGGCTGCCAGCCTGGGTCAGCTAGAGAGCCGCATCCAGGAGCTGGAGGACCGGCTGCAGAGCGAGGAGAGGGAGAAGGCGTCCCTGCAGTCCAGTCTGCGGCGGACAGAGCGGAAGGTGAAGGAGCTGACCATTCAGCTGGACGAGGAGAGGCAGCACTTCAATGACCAGAAAGACCAGCTTTCTCTGAAGATCAAGGCCCTGAAGAGGCAGGTGGACGAGGGTGAGGGGGAGGTGGAGCGGCTGGAGGGGGCGCGCAGGAAGGCCCtgagggagctggaggagcagcaggagcTGCGGGAGCAGCTGGAGAGCAAGATCAGTGTCCTGGAAAAGGAGATCTGgcgGAAGTCCCAGTCCCAGCGGGCGGCCCTGGATTCCACAGCGCTGAGCTCggatgaggaggaggggagCTACGACCCCACCGCCATCACCTCCATTCTGACGGAGAGCAACCTGCAGACCAGCTCCTGCTAGACCCCAcgcccctgcctctctctccgtCCTCTCCCTCCAGCTCTTTCTCTCCCTACATGTCATTCCCTCTCTTGCTCATGTTATCTCCATCCCACCATCTTGCTTTCACAAtccccttccctctcttctGTTGAGCTCTCTTACtcactctgtctgtcttgtcttccccacccccccgctcCTCTCCTGTCCTCTACACTTATATTGCCTTGTCCTGACTAAAAATCCATTTAGACATTTTCTGGACCATCTGGAATTGTCACCAATGAAAAAGACCAGCTGCGCAAACTCTCAGCTCAACTCCGTGTGGCATGTGgtctttttaaaaggttttctgGTGGGGGTATTATGAGCGGGGTTTTAGGTTCGAATGCTGCCTGCACCCATTCCCTGTCAATCTGGTTATGTATAATGTTTAGTTCACACGTTCTCTCACACGCACTGTTACATTGCTGTCTGCACCTGTTCCAATCTGACACACTGTCCCACTTTCCTACTCCACCACATGCTCTTCCCAGCCTGATTATGAAAGCACAGCGCATTGCCCGAAATCAGCATGTGGTTTTGATACCATCACAGTGATGAtattatagtttgtttttaagcacCATACACCTATTCTATAGTTCCCATGAGCATGTTTGAAATACCATTCTCCCTCTATGCACTACATACACACAGCTCACTACACTCACGGTTTACTGGAGAGACCCAGTACAGCAGGTCCTCCAGCTTTGTTCCTGGAGACACGGATCCTCTGTTGCCCTGCGCTGCACAGAACACTGTCCACCAAAGCATGGGGACAAACAAAGTCACACAAGAccgctgatcagtgtatataatacagtacCAGTACAGTATAgagcaatacaattattattggCCAActcctcaaaacaaaacactgattaCAATGAGTGGAACTGTGCTGTACCCTTAATCCCTTGTGGTAAGGGGTCAAAGGTGAAAGTTCAGCTGGAACACTGCATTGGGataaattgtaaataatgaaatctCACTGATATGccttattaatattttttttggttgttttctttactAAAACTACTGCTATGTTGCATTTTCTCCGAAGAAGAGAACTTCTTACCTGTCTGCAGTTAGCCAGAATTAATCAACTGCTGTTCCTCACTGggatatattttacttttgtatttttatatacatattttataatctgcaatcttatttctctctttaatttagtatttaataatgattaaattcAGTTCCTTGtcttgtatgtaaaatatttatggacaGAGGCCGTAACATCAGTTGCAGACCGTCTGCAGCAGAGACCTGCACGAAACCACACCCAGTCCACAGGCCGAGAGAGATACTATTGTCTATGCTGTACCTTTTTGATTGACAGATGGAAGCGCAAGGCTCTCTTGAAGTTAGTCTCTCTAATCAAATGTCAATCAAAAGTTGTAAATGAggacagtttatttaaatacactgtgtgtcgttttaatgttttggggcttttttttgtttttaatgggaaGATCAGAGTGAAATTAAATTGAGGGGCaagaattttttattttgtacttggaAACTGAAGGAATACCTCTTAGCTGTGTGATCTTGATTCTTGTACGGGCTGATATGATCATtttgaggtgggggggcagattTGTACAACTGAATCactgtgaatttgtatttacatgtgcacatatattttgttgtctccaataaatattatttgggAAAAGCTGAGCACGCTGTACGTCCTTTTGCCA
>TU172681
GGCGGGGCGGCCTGGGAGCGGCGGGGACAGAGCGCCGGTCAACAGGTTGATTTGCGGGACttgagtgtttgttttgctcGCTGTTTTAAAAAAGCCACGAAACAGTGAACCGACAACAACCAGACACAGTCGCAAACCTTTATCACCGGAGTGGCGGAGACGGAGCAGGGACGCAAACCCGCACACTGAAGTGGCAGACAGGCGGTCTGTAGtCTCCTCTCAGCGATGCACAGTGGGACAGAGTCGGGGGACCGCAGGGGGCCTCTGGACTACGGGGTCCAGATCCGCTTCATCAATGACCTGAATGaga

Function

GO: NA

KEGG:

id description
K06102 CGN; cingulin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012512 True 5447 mRNA 0.57 19 20254350 20270919
TU172681 False 310 lncRNA 0.59 2 20246651 20254434

Neighbor

gene id symbol gene type direction distance location
AMCG00012514 NA coding upstream 6620 20239834 ~ 20240031 (+)
AMCG00012513 shc1 coding upstream 12596 20226398 ~ 20234055 (+)
AMCG00012511 NA coding upstream 111998 20133322 ~ 20134653 (+)
AMCG00012496 NA coding upstream 389948 19852153 ~ 19856703 (+)
AMCG00012497 NA coding upstream 420388 19817519 ~ 19826263 (+)
AMCG00012517 NA coding downstream 12330 20283249 ~ 20291367 (+)
AMCG00012518 LOC107669979 coding downstream 29907 20300826 ~ 20327286 (+)
AMCG00012515 NA coding downstream 77688 20348607 ~ 20353279 (+)
AMCG00012519 NA coding downstream 101761 20372680 ~ 20385756 (+)
AMCG00012525 NA coding downstream 513700 20784619 ~ 20788119 (+)
G137337 NA non-coding upstream 8778 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 18615 20165283 ~ 20228036 (+)
G137348 NA non-coding upstream 44847 20201551 ~ 20201804 (+)
G137242 NA non-coding upstream 453119 19788987 ~ 19793532 (+)
G137196 NA non-coding upstream 556866 19659746 ~ 19689785 (+)
G137364 NA non-coding downstream 50687 20321606 ~ 20328824 (+)
G137494 NA non-coding downstream 262833 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 486111 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 949280 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 961061 21231980 ~ 21267912 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 351052 19891167 ~ 19895599 (+)
G137252 NA other upstream 431034 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 896449 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 1007693 19237689 ~ 19238958 (+)
G137083 NA other upstream 1072230 19169748 ~ 19174421 (+)
AMCG00012516 NA other downstream 60162 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 130090 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 160006 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 210195 20481114 ~ 20493787 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 721571 20992490 ~ 21039749 (+)

Expression


Co-expression Network