AMCG00012515


Basic Information

Item Value
gene id AMCG00012515
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20348607 ~ 20353279 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012515
GCGGTGGTATACGTTCCTGTCAGTCGGGCTGCTGTTGGGTGCTTTTCAAACTATCCAAACAGCACAAGCAGTGAAGTAACATTTCTCACAAAAAGACGGATAAACTCATCTAAACTCATCAGATGAgcttgtttgatttatttcgTGGGTTTTTCGGGCTTCCAGGTAGCCGCTACCCCGGGGACAGGCGAAGGGATCCCTTCTTTGACAGCATGACCCATGATGGTTATGAAGAcaatgatgacgatgatgacgATGCTGAAAGGGGGTCAGGGCAGCTCTGGGATGAGGGTCTGCGGTTCGGGGTCAGTGTGGGACCGGGGGGGGTGCGGCTGCAGGAGCCTGCCGCCTTTCGGGAACTCTTCCGCGAGATGCCCAGTATCGAGGCACCCCCTCCATCGGGGGGGTTGGGCAATGGCGGTGGTCTGGGTAGGGGCGGCTCACTGAGGGACTTCATGCTGAAACACCCCGATggtccctcctcctcctctccagaCACAGGAGGAGCACCAGACAGACTACGACCCCACATGGAGGATAAAGACCTACCCTCCAGCACCCACCCCCCCATTGCACCCTGGAGCCCCTTCTCTAAGTCCTCACTCCCTTTCTCCCttttgctctctccctctccccccaaTCCTTTCATCCCTGCTTCTGTTCTTCCTTCCCCCCTGTCCTTTCCATATTCCTCTTTCTGctactccccctctctccctcttctctctctcccctatCTCTGTGTTCTGTCAGACCTGGACTCCAGAGTGTCCTCGGAGGGACTGGACACGGTGCTGTCGCCCCAGCATCCCCGGAGCAGCAAATTCTTCCAGTCTGTCACTGTCACTAAAGTGGTGTCGCCTGACGGGACAGTGGAGGAGAGGCGGACGGTACGGGACAGCCAGGGCAATGAGAAGACTACAGTGACACGGTCAGGCCCCTCGGACCGCACCCCCTCCCTCAGCCCCCAGCAGCCCCCGGGACCTGGTGTGCCTCCCTCAGACCCAGGGATGCAGGACGACTTCTCCATCTTTTCCAGGTTTTTCGGGGGATTTCGGAATCGCTAGGAAGCCtgctgggagaaggaggggTTTGGGGGAGGGCTGTGTGTTGGCATCAAGGACATCTCCAGTTGAACAAGCCCAGATTTCTGCCCAGTCCCCTGTAGTTGGCAGACTGATGCACAGGAGTCTCACAGAGGGAGAGACGTGCAGCGCGAGCCAGATACGGGCTCTGTGCTCTTTGGAACTGGATGTGGCATTGGAATAGATTGGGTGGGTGGTGGGTGGACTTggcaacatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgtctatgccccgcacacacacacacacacacacccaggccTCACCAACACTCACCAACAGCAGTGGCCAGTGTatgtttgccaaaaaacaaactaacaaccaacaaaaacaaaaacctgaacTGAATGTCATTGCacaactgtctctctctctctctcctcccccctcttccctctcccttgtatcaatttattttagttgtgttCTTTTGAGTTACCAACATGTACAGAAATTGCAGAGTAACCAGAATTATTTGGTGATGATGAtctatagtatttatttttgtaactgtgttgtgttgcactgACAGTGTCTCTGTGGCAGTGTCTTCAGTGTGAGACACTCCAGCTTGATTAAAGGATGTTTCTGATGCAAAATGcccccgtgtgtgtgtggggtggggggtaataCATT

Function

GO: NA

KEGG:

id description
K16220 HAX1; HCLS1-associated protein X-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012515 True 1773 mRNA 0.54 6 20348607 20353279

Neighbor

gene id symbol gene type direction distance location
AMCG00012518 LOC107669979 coding upstream 21321 20300826 ~ 20327286 (+)
AMCG00012517 NA coding upstream 57240 20283249 ~ 20291367 (+)
AMCG00012514 NA coding upstream 108576 20239834 ~ 20240031 (+)
AMCG00012513 shc1 coding upstream 114552 20226398 ~ 20234055 (+)
AMCG00012511 NA coding upstream 213954 20133322 ~ 20134653 (+)
AMCG00012519 NA coding downstream 19401 20372680 ~ 20385756 (+)
AMCG00012525 NA coding downstream 431340 20784619 ~ 20788119 (+)
AMCG00012532 NA coding downstream 465971 20819250 ~ 20829362 (+)
AMCG00012536 NA coding downstream 480592 20833871 ~ 20839466 (+)
AMCG00012530 NA coding downstream 490525 20843804 ~ 20847235 (+)
G137364 NA non-coding upstream 19783 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 110734 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 120571 20165283 ~ 20228036 (+)
G137348 NA non-coding upstream 146803 20201551 ~ 20201804 (+)
G137242 NA non-coding upstream 555075 19788987 ~ 19793532 (+)
G137494 NA non-coding downstream 180473 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 403751 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 866920 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 878701 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 954939 21308218 ~ 21309033 (+)
AMCG00012516 NA other upstream 3961 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 77688 20246651 ~ 20270919 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 453008 19891167 ~ 19895599 (+)
G137252 NA other upstream 532990 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 998405 19332328 ~ 19350202 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 47730 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 77646 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 127835 20481114 ~ 20493787 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 639211 20992490 ~ 21039749 (+)
G137583 NA other downstream 703416 21056695 ~ 21059263 (+)

Expression


Co-expression Network