AMCG00012516


Basic Information

Item Value
gene id AMCG00012516
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20331081 ~ 20344646 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012516
AGCAGCCCGGCCGTGCAGAAGAGCGGCTCTGACAGTGCGCTTGGAGAccgcagggagagggagagggagaggcaagGGACTGGCAGGGAGCAGGGGAGTAGGGGCAGGCCGgagtggaggaggggggaggaCGAGAGGAGGAGGGCGGGCTGGTTGCGGTCAGTGTCGATGGACAACGGCAGCCgtgggaggagagaggaacCCATGTCAAGAAGAGGAAAAGGAGTAGGGGGAGAAACTGTGGCGCCCCTCCCCACAGAACCCCAAGCCGCCCCACGTGGATATGTCCTGCCCAGGGCCCAGGAGGAGGACCAGTTTGATGTCCTGAAACTCAGCCACCTGCAACCCCCCCAGGAGGCCCCTGCTGCACTCCCAGAGCCCTCCACAGCCCAGGCAAGCGCCACCTCCAACAgcaacaattacaacaacaacaacaacaacaacaacgctCTCCCCAGTAACTCCTTCCCCGACTCCCATGCCGGTGCCAGGTGGGCTCCAGTGGTGTGCGGCCCTggctcccctctctccctgccacACATGGCAATAATCGAGCCCCCTGTTTCTCAGCCCGACCGCTCCACCTGGGCGCGTTGGAGCTCGGAAGAGGAGGACTCGGACGACTCTGACGACTCGGACACAGACGTGTACGAGGACTCTGAGAACTGTGACTACGACTCTGACTCCTCCTCCGTCACCATCACCAGCAACATGAGCCAATCGGATCGCCGCAGTTTCTCCATGAGCCTGGCAGAGCTGTGTGATTTTGGAGGTCTGGAGTTGTTGCACCCAGGGGACCCCGGGGGAATGAACTCGGACTCAGAGGACAGCCTATCGGAGCGCAGCGCCTCGCTCCGCTCCAACATGTCCGCCCTCTCGCTGGTGTCAATCATACCCTCTGACGAACTTGAGCGCTTGTTGGATGATGTCCGgggcctggaggaggagactcTGGAGAGCTATGAGGATGTGCATGTGGTGGTGTTGCACAAGGAGGCGGGTGCTGGATTGGGCTTCACTGTGGCTGGTGGAGTGGACCAGAACAAGCCTGTGGTGGTGCACAAGGTGTTCCCGTGTGGCCTGGCGGCTCAGGAGGGCTCCATCTGTGAGGGCGACCGCGTGCTGTCAATCAACGGCACGCAACTGCAGAACTCTGCCCACTGGGAGGCATTGCGGACACTGAGACGAGCGCGCTCACGGGCGCAGGCCATCGTGGTGCTGCAGAAAGGAGGCTCCGGCCAACGCCCACACCACAGCGACCTGCTGCCGGACCCAGgggAAGCAGGGCGGACGCTGCGAGTGCTACTGAATAAGAGTTCCTCTGACCTGGGTTTCAGCCTGGAGGGAGGCCGGGGCTCCAGCCAGGGGGACCGGGCCCTCACTGTGAAGAAAGTCTTTCTGGGTGGCCCCGTGGAGCAGGTGTTCCCAGGCGATGAGATCCTGGAGGTGAAAGGTCATAGCCTGAGAGGCCTGAGGAGACTGGAGGCCTGGAACTGGATCAAGAGACTGCCCTCTGGCCCTGTGGAGGTGTTATTGCACCGTAAACACAGACTctagggagagagaggaagagaaggaatGGGATTAAGGATTTATCAAAAAGGATTTAGATGTATTGCAGCcttgacagacagacatacagacaggcACAGCCATACATACAGACTCACTGCCAGACAGATatagcacagacacacataagCAGACATACAcccatagacacacacacaagacagccACAGAGCAATGTAGATAGTCGCAGAGTGGGTCAGTTTATTGCCAGACCCATTGATGGCCAGTTCAGCCTttcacaatatttaatatattaggaaaacaaagccgtgaaaaacagagaaaaagaaagtccttttaaag
>TU172707
GGCAGAGCAGAGCCGTAGGCAGGGATGGTGAGGGACAGTAGCGACAATCTCAGATTAAACGGCAACAACAGGCTGTCTTGCCGTCACACTGAACCACTGcggtttattttttagtttattttttttgtttttttgcttagattgttttaaatattttcatatattgaaTTGATGTAGGGGAACTGCCCATAGAAACAACAGGGAGACCAAAAGAGAGACACGAGGGACGgccgctgagagagagagacgtacACAAACACAGCAAGAAGACAAACGCAGatccacacacactcacaaaatcAGTTTAGCGCACAGTTTCgaatgaaactgaaaaggagagatcagcagaatgAAAAAAGATGAAGGCTTTGGTGAGCAGCCAGTGGAAACGAAGgatataagagagagagagagagagagagacggggacaGAGACAGTGTCAGGAGAAGAGCGGTACAACGACACGAGCAAAACAGGTAGAAGAATACCCCAATTAAGAAAACAAGGGAAAGGTGGCATTTAGATCGACCACATATTTTGGGATAGCAGGATCAAGGACCCAGAGACTACTGCACATATCTTCTGCGTGGAGCTCTAAACGCTCGGACACTGCTGGAGAGAGgggtcactgactggactggactcgaCAGCTGCACAGTCACTGACCAGACTGGACAACAAGAGAGAcgggcacacatacacacacacacacacacacacacagacacatagttGCAActggcagggagagagagaggaggagggcaCAGGAAATTTAAAACCACAAGAGCAGCAGATTGTGCCCGAAGCAGAAAGAGACGAAAAGAAAGTGACGTcaagcaaagaaaaagaaaaagagaaaaaaagaagttAAAACAAAGACGACACatcgcctcctcctcctcttcctcacccaAGGCAGCaaactacatacacacacacatacatactccaacacactcacactgacattCAGCCCCAAAACGGACACACAGAACCCTCAACACGGTCCAGATGTGTGGTCCAGCAGGCCCTGGCCAGCTGTTACCTCCGTATAACTTGAGCATTGCACAGCTTTCACCATGACTATAATGGTCAGTCACCAGAGATCTGTCTGGGAGCAGCCGGACACCTAGGGGGCAAATCTGGACATTGTTCTAAGCTGTGGAATTTATTCGTTCACAAGTTTTCTGGAAGCTTTTGTCTTCATTAAATTTTTCTGCAAGATTACAGCTCCACCGTCTGGATTTACAACAGCATTTTAATcacaaactgtttttatttttttccttcctacATTTCAGGAGAGAATTGGAacgttctgttttgtttttccacacttTTGACAATTTGGATTTATTCATTCTGGTTTTGGCTggattattttggtttgtttgtttgtttgtttgaagaaCCATCAAGCAATTGTTTGTATATAGCTCCTTTTGCGTGGCAACCCTAATTCtatatattattgcatttcCTGTGCTGAGCCAACTGATCGGACAGGGAGTGGTCTGTGGTTTGCCTGTGTGGCCACTCTGCGGTCGCTTAACTAGACACAATGGACTTGAGTGACCAGTGCTTGCCCGCCACCGGAAAGGACAGTGGGGTCCTGGCTCAGCCCACGTCCTTGACCACCAAGGCCCCAGCAGGGAAGGGAGTGTCCCCCCGTTTCTTAATCCGATCTGCCAAGTCCTACTTGGAGAATGATGACTTCCGGACCCGGCAGAGCAACCTTCACACACTGAGGAGTGTTTTTGAGGCTGGCGGCACCCCTTCCTCCCTGGGGGAGTTAGGGGAGAGGGTCAGTGGCAGGAAGGAGAATGGGGAGCGAGGAGCACCTGTCCCTGCCCAACTCAGCCCATCCCTCCCACCTGCTGCCACCCCCTCCAGAgcaggggggaagggggggattGGGGGGCTGAAGAGGAACCACAGCATGGGCTCCCTGAGGTCTGGGCAAGGGGGTAACTACAACTCCAACCCCAAGACAACCACCAACGCCATGCCAAACACAAACCCTAACCCCAagaccaacaccaacaccattGCCACCCTAAACACAAACCCTTTCCCTAAAACCAACACCAACCTCAACACAAACCCCAACTCCAAGACCAACACCGACGCCACCCCAAACGCCACCCCAAACACCACCCCCAACCCCAATCCCAACACCAAACTCAACATCAACAGCAGGCACAACACCACAGACCCCACCACGGACTGCCGCCCCTGGAGACTGGCCTACCAGAGTCGTAGCAAGAGCCTGGACATGCGGGAGGGCAGTGGGCTGGAGGCAGCACCTGGGTCCAGggtggggggaggtgtgggaCTTGGTGGGGTGCGTGGCCTGAGCCAACCATTGTGGCCCTGGGAGAGAGGAGACAGCAGCTATGTGCGCTCAGCAGGGAAAGCAGAACTGAGGAGCTGTGGCAAGGAGGGGCTGGTGGTAGGgccagaggagaggagagacggGAGGAGCCGAATCCTGCTGGTGGTGGAGCACTCTGGCAACAGCCCCTCCCTCCCTGGCCGCATCAAGCCCAGCTCGGACTCGGAGCCGACATGTCCCAAGAACGGCCTCTTCCCCTGGCAGCCACAGCCCCCCAGCTTCCCCCTCTCCCACACTGGGCCTACCAGTGGCAGCGCCCCACCCCAGAGCCTGATGGGAGGGGAGCTTGGGGGGGTGCGGAGCCTGGCCAGAGGTGGGGGGCACCTCAATAGTAAAGATAACGAGAAGGAGAACAGACACGGCACCCCCAGACCCAGGCAGCCCCCCCCGGTGTCGAACAAACCTACCCCCTCCATGGGGACGGGGAGCCCGGCTTGGACTGTGCCCTCCCTGCTGCCCCAGCCCCAGCCTGAGCCATTGGTGCCAGAGAGGGGCCCCACACGCACGTTCTCCAAGGCTGGGGACAGGAGAGAGGAGGTTCTGTCCTGGCAGACGCAGCGAGGGCCCCAGGAGGTGTTCACAACGGAAATTGTGTCCCGCAGTAACGCTTTGGAATCCAAGCAGGAAGGAGTGGGAGAGGTGACCCCTAAAACTCAGGCCTTctccttttcttcctcctcttcctctttcacTTCCAGGCCCGAaggagggaagggggggggcaGTCCCGTCCATCTTGGCAGCCTTTCTGGCTCGGTGCGGAACAGAATTCATCGGTTCGAGACGCTAGCCCAGCAGAGCCAGGGTCCAAGACCTGGCCAGCCCACAGACCGGCGCCCCCTGGGCCAGACCTCCTTCTCCACCTTCCCCTTCTCCCACTCGTGGGGGGGGCACGCTGTCTCCGAGCCCGAGCCATCCCGTAGCAGCCCGGCCGTGCAGAAGAGCGGCTCTGACAGTGCGCTTGGAGAccgcagggagagggagagggagaggcaa

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012516 False 1875 mRNA 0.59 6 20341372 20344646
TU172707 True 3395 TUCP 0.55 2 20331081 20341446

Neighbor

gene id symbol gene type direction distance location
AMCG00012518 LOC107669979 coding upstream 3795 20300826 ~ 20327286 (+)
AMCG00012517 NA coding upstream 39714 20283249 ~ 20291367 (+)
AMCG00012514 NA coding upstream 91050 20239834 ~ 20240031 (+)
AMCG00012513 shc1 coding upstream 97026 20226398 ~ 20234055 (+)
AMCG00012511 NA coding upstream 196428 20133322 ~ 20134653 (+)
AMCG00012515 NA coding downstream 3961 20348607 ~ 20353279 (+)
AMCG00012519 NA coding downstream 28034 20372680 ~ 20385756 (+)
AMCG00012525 NA coding downstream 439973 20784619 ~ 20788119 (+)
AMCG00012532 NA coding downstream 474604 20819250 ~ 20829362 (+)
AMCG00012536 NA coding downstream 489225 20833871 ~ 20839466 (+)
G137364 NA non-coding upstream 2257 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 93208 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 103045 20165283 ~ 20228036 (+)
G137348 NA non-coding upstream 129277 20201551 ~ 20201804 (+)
G137242 NA non-coding upstream 537549 19788987 ~ 19793532 (+)
G137494 NA non-coding downstream 189106 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 412384 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 875553 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 887334 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 963572 21308218 ~ 21309033 (+)
AMCG00012512 NA other upstream 60162 20246651 ~ 20270919 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 435482 19891167 ~ 19895599 (+)
G137252 NA other upstream 515464 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 980879 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 1092123 19237689 ~ 19238958 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 56363 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 86279 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 136468 20481114 ~ 20493787 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 647844 20992490 ~ 21039749 (+)
G137583 NA other downstream 712049 21056695 ~ 21059263 (+)

Expression


Co-expression Network