AMCG00012519



Basic Information


Item Value
gene id AMCG00012519
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20372680 ~ 20385756 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00012519
ATGTTGATGGAGCGAGCCAGGCGGGGGCTGAGGCTGAGCAGCCCGCTGGCAAGAGAGTGCCTTAGTGAGTTTATGGGCACGTTTGTCCTGCTGGTGAGTACACTGCAACTGGCCCGAGGCGTGATGTCGGCCATGTACCTGTGCATGGGGGTCTCAGGTGCTCACCTGAACCCTGCAGTGTCCCTGAGTTTCTGTGTGCTGGGGCGGCTGCAGTGGCCCCGGCTGCCCTGCTATGCTGTGGTCCAGGTGCTGGGCGCCTTCACAGCCTCGGCCGTGGTCTTCCTGCAGTACTACGACGCGATCATGGATTTCTCGGGGGGCAACTTGACAGTGACTGGCCCCACAGAGACGGCGTCCATCTTCGCCACCtacccctccccccacctcaGCCTGTCTAGCAGCTTCATCGACCAGGTCCGCCAGCACACACACGCCCTCACAGCCCGCACCCTCACACCCTCACAGCCCGCATGGCCACGCCCATGCCCACACAGCCTCATTGTCCGCTACGACGCCCTACTCTCTGCTATGATGCACCCCATTGTGATCGGCACGGCTACGCTGTTGCTCTGCATCCTGCCCCTTGATGACAAGCTGAACAGCCCTGCCCCCCCCGGCCTGGTGCCCCCACTGGCTGCCGTGGTGGTGCTGGGCATCTCCATGTCGATGAGTGCCAACTGCGGGGCCGCCATTAACCCGGCGCGTGACCTGGGGCCCCGGCTGTTCACCCTGACCGCAGGCTGGGGGCCTGAGGTTTTCACggcATACTCTCACTGGTGGTGGGTACCATTAGTCGCCCCAATGCTTGGTGGAGTTCTGGGCTCACTGCTTTATCTCGTGTTCATCCAGTGGCACCTCCTTGACCCGGACAGTCACCCTGGCACAGAACCAGAACCCGGGTCTGAACCCATGGCCAAAGGACTGTTCGGCTGCGGTGGGGTTGCCCAGGTGACAACGAGCAGCGAGACAAAGGGGCAGTACCTGTCAATCAACCTGGCCTTCGCCCTGGGGGTCACATTCGCCGTGTATGCCTCCCGCGGTGTCTCAGCGGCCCACCTGAACCCTGCTGTCTCTCTCAGCCTGTGTGTTCTGGGCAAGCACCAGTGGAAACGCCTGCCGTTCTATGTCTTCTTCCAACTGCTGGGGTCCTTCCTTGCCGCGGCAACAGTATATGCTTTGTACTATGaGGCGATAATGGAATACAGTCAGGGCAATCTGACAGTGTCTGGCCCCAGAGCCACGGCTGGGATCTTCGCCACCTACCCCTCTGACTACCTCAGCATCTGGAGTGGTTTCCTGGATCAGGTGGTGGGCACTGCGGCACTGTTGCTGTGTGTGCTGGCAGTAGGGGATGAGCGGAACAGCGCCCCCCCCGCAGGGCTGGAGCCGGTGCTGGTGGGCCTGGCAGTGCTGGGCATTGGCATCTCCATGGGGGGCAACTGTGGGTACCCCCTGAACCCCGCCCGTGACCTGGGGCCCCGCCTTTTCACGTTCATCGCAGGCTGGGGGGGACAGGTCTTCACGGCGGGTGGGGGCTGGTGGTGGGTGCCTCTGGTGGCCCCCCTGCTTGGCGCTCTGACGGGCACAGCACTGTACCAGCTGCTGGTGGAGTTCCATCACCCCCCCCATGAACTCGACCCCCCTGGCACACAGGCCAATGAAGTGGGCCTAGCGCTGGAGGTGGAAAGGGAGGCCGGGGAGGAGAAGGGGGTCAGAAATGGGGGGGAGGTGGGCGACGAGCGCATAATCAACCGCCTCtaagtgagtgtgtgagaggtGGGGGGTCAGAGGCTTGATactcaaaaaaatgtaattatgtatagTTTCCATTGGCTTCCATGTATCTCAGCTAATACAGGACTGTGATCTAAACACTGGGCCctataatatactatactatatttgCTTTAGTTTTACTGCCAGAGAATTTGTACCGCCAGTGTTCAGTAGCCACAGCCCCGCTGTGCTCAGTGATATCTCTCATTAGTGTTCATGTGATCACTATGCTTGCATTATAATTGAagtctgattttaatttctttcatcACTGCAACGAACAAACACTTGTAATTGGCATTGCATGTGAtgttattgcattgtattgttatATTGCATTTGTTATCCTACCCCAAATAAAGATTCTAATAAAAAACGTGTATAGTATAGTTATGTGTCATGCATATTATGCACccaacattaaatgtattttctattttgttacaGGGTTTTGTGGGTAAGCTTTAtttcttttgtgtgtatttctgtcaCACCGGCGGCCTGTGCGGTGTGTGAGCTGTGTCGTGTGCATGTTGCTGACTGTCcgaaataatacataatacaagcgtgtgtcaataataataatattatgaagctgtgcagtgtgtagtgggAGAGAAAATCATATATACTGTTTGATCTGGTGTTTGTGTGTCGTTTTACAGA

Function


GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K09878 AQP10; aquaporin-10

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00012519 True 2442 mRNA 0.56 12 20372680 20385756

Neighbor


gene id symbol gene type direction distance location
AMCG00012515 NA coding upstream 19401 20348607 ~ 20353279 (+)
AMCG00012518 LOC107669979 coding upstream 45394 20300826 ~ 20327286 (+)
AMCG00012517 NA coding upstream 81313 20283249 ~ 20291367 (+)
AMCG00012514 NA coding upstream 132649 20239834 ~ 20240031 (+)
AMCG00012513 shc1 coding upstream 138625 20226398 ~ 20234055 (+)
AMCG00012525 NA coding downstream 398863 20784619 ~ 20788119 (+)
AMCG00012532 NA coding downstream 433494 20819250 ~ 20829362 (+)
AMCG00012536 NA coding downstream 448115 20833871 ~ 20839466 (+)
AMCG00012530 NA coding downstream 458048 20843804 ~ 20847235 (+)
AMCG00012534 NA coding downstream 520300 20906056 ~ 20916631 (+)
G137364 NA non-coding upstream 43856 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 134807 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 144644 20165283 ~ 20228036 (+)
G137348 NA non-coding upstream 170876 20201551 ~ 20201804 (+)
G137242 NA non-coding upstream 579148 19788987 ~ 19793532 (+)
G137494 NA non-coding downstream 147996 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 371274 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 834443 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 846224 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 922462 21308218 ~ 21309033 (+)
AMCG00012516 NA other upstream 28034 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 101761 20246651 ~ 20270919 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 477081 19891167 ~ 19895599 (+)
G137252 NA other upstream 557063 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 1022478 19332328 ~ 19350202 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 15253 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 45169 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 95358 20481114 ~ 20493787 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 606734 20992490 ~ 21039749 (+)
G137583 NA other downstream 670939 21056695 ~ 21059263 (+)

Expression



Co-expression Network