AMCG00012520


Basic Information

Item Value
gene id AMCG00012520
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20292730 ~ 20297061 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012520
tttggtgcCGAGCGTCCCTGATCACCTGATGGTTGACAGCGCAGCTTCGACGAGCTGCTGCTTTTGAGTTTGTTTTGGGAGAGGAGGACTCGGAAGACTGGGCTAGAAACGTAGGCAAAATGTAGGGAATCCAATGAACAGATGACAGCTTGTTGATAAACGATAGTTACTAATTATATTCTCTAttgcacatttatataaaaaaaatatatataaacaaaatgtctgCGGGACAGAGTCTGTCCGGTGTCAATGTAGTGCTAGTTATGGCCTACGGAAGCCTGGTGTTCGTGCTGCTCTTCATCTTCGTGAAGAGGCAGATAATGCGCTTCGCCATGAAGTCGCGCCGGGGACCCCATGTGCCCCTGGGCCACAACGCCCCCAAGGACCTGCGGGAGAACATGGACGCACAACTGTCCCGGGTCCAAGACATCCGGATGAGGGCTCTGGACGCCATCAGAGACTCAGACATACCGTTCCCGGAGGCAGGCCGGAGCGCTCGCGCGCTGACGGGCCGCACATTCCAGAGCTTTCTACTGGATCTGCGTAGCTCTCACTCGCTGTTCAAGGGGGCGCGCCGGCCGCTGGTGGACAGGCTGTTGGAGGGATACGACTCCGCCCGTCATGGCACAGGGGTGTTTGGTGAGGCAGAGTTCCAGCAGTATCAGGAGGCTCTGACAGAGCTGGCCACAATTCTGAATCAGCAGCACCAGTCCGCAGCGAAGGACTTGACCAGCTCGCCTGAGACTCCACCCCCCTCCACCATCCAGGTGACCTACCTGCCCTCAGGCCAGCGCAGCAAGAGGCCCAAACACTTCCTGGAGCTCAAGAGCTTCAAGGACAACTACAACACCCTGGAGAGCACGCTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012520 True 872 mRNA 0.56 7 20292730 20297061

Neighbor

gene id symbol gene type direction distance location
AMCG00012507 smg5 coding downstream 113766 20168155 ~ 20178964 (-)
AMCG00012508 paqr6,LOC107728479,LOC107688246 coding downstream 135518 20147777 ~ 20157212 (-)
AMCG00012509 NA coding downstream 174165 20113894 ~ 20118565 (-)
AMCG00012510 NA coding downstream 179594 20108162 ~ 20113136 (-)
AMCG00012506 NA coding downstream 185482 20103314 ~ 20107248 (-)
AMCG00012524 NA coding upstream 406368 20703429 ~ 20742998 (-)
AMCG00012526 NA coding upstream 535880 20832941 ~ 20834492 (-)
AMCG00012528 NA coding upstream 561664 20858725 ~ 20859203 (-)
AMCG00012527 NA coding upstream 562204 20859265 ~ 20862618 (-)
AMCG00012537 NA coding upstream 604663 20901724 ~ 20905761 (-)
G137384 NA non-coding downstream 64771 20167075 ~ 20227959 (-)
G137390 NA non-coding downstream 80418 20209567 ~ 20212312 (-)
G137389 NA non-coding downstream 90835 20201564 ~ 20201895 (-)
G137270 NA non-coding downstream 392290 19900206 ~ 19900440 (-)
G137248 NA non-coding downstream 518644 19768128 ~ 19774086 (-)
G137449 NA non-coding upstream 79382 20376443 ~ 20377953 (-)
G137472 NA non-coding upstream 126326 20423387 ~ 20423680 (-)
G137495 NA non-coding upstream 239887 20536948 ~ 20537194 (-)
G137518 NA non-coding upstream 245704 20542765 ~ 20552145 (-)
G137517 NA non-coding upstream 272757 20569818 ~ 20577843 (-)
G137408 NA other downstream 21866 20261002 ~ 20270864 (-)
AMCG00012503 NA other downstream 382352 19903106 ~ 19910378 (-)
G137246 NA other downstream 499199 19714162 ~ 19793531 (-)
G137199 NA other downstream 785336 19441927 ~ 19507394 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 1249281 19032603 ~ 19043449 (-)
G137608 NA other upstream 738102 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 743028 21040089 ~ 21042443 (-)
AMCG00012559 NA other upstream 1136603 21433664 ~ 21635426 (-)
AMCG00012556 NA other upstream 1197166 21494227 ~ 21502199 (-)
AMCG00012564 NA other upstream 1781112 22078173 ~ 22088469 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding CI01000016 null 3555300 ~ 3559186 (-)