AMCG00012521


Basic Information

Item Value
gene id AMCG00012521
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20430925 ~ 20445287 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012521
ctctctctctctgaggggAAGTCAACCCTTCAGTTTAGTGGAGTTGCTGATTGACAAAAGACACAGACGAGACACCTGTTCGCTTCagggtgttattttattttttaaaacatctctgTCAACGAGGAGATACAATTACCTGTCGTTTTGAAACTACAGATGTTTTGTCAACTGCCCGTTGTCATCTACGGGAATAGGCTGTAGGAGCAATGACTGTGATTTTGAaattcagttgttgttgttttttaagcgGAACACACTGAGGTGCCTATTATAATAAACAGTGCGGGAATGAGATGCTGAAGGTGAGGCTGGTTTTGCTGTCTGTGGCCGAGATGGGGTTGATGTCGGTTGGCTGtggactgtgtctgtgtctgtgtctcaccGTCACAGCCGGGAGTGAAGACATCAACCGAATGTGTCCACAAACAGTTCCTTCCAGGCAGGTCCAGGTGGTGGCCCCGGGGAGCAGGGTCATTCTGAGCTGCAATGGGACAGTTACCATTAATGGTGTGGATGTCACTGTGGACAGTGTGGATGTAGGGAACAATGGAGgcaggagagatggaggggacAACCCAGGACAGAGGAGGGACACTGGCGAAAACGAGGACAGACAGCATGGCAGGCAGGGAGTGGACATATCGAAGAGAAAGCCCAGAGGGGACCCTGATGGCACCAGGGACGGAGCTGAGAGAGTGGATGCTGTCAATAACATGGGGGGCGTGGACACACCCAATCAGACAGAGGTAGCATACAGTCCCGACACGGAAACAGTGAGCCCAACACCGGAGCTGGAGAGTATACGCAGTCCAGACCATGGGGACACAGCAGGCTCTGTGAACACACCCAGTCTGGACACCCTGGATGGGATGGAAAACATTGAGGTGGACCCTGATTTCACCATGGCAGAGGAGGGAGTGGACAGGGTGAACAGCATGGAGGGGGGGGACGGGCCGGGGAGGCCACGGGAGACGCGGGAGGCAGGAGGGGGGCGACAGAAAGGCAAACCCTGGCACTGGATGCGGGACGGCCAGCTGtcccgggggggggggcacactCTGACCCTCAGCACTGTGCtgcctcCAGAGAAGCCCACCCTGTCCTGCCAGAGGAAGTCGCCTATCTCTAAAATCCGCTGTGATTGGATAGCCACGCAGGTCGCATCCCCGATTCCCAAATGCAAAATCTTTGTCAAGAAGGGGTTAGTGTCTCTGAGTGtcAAGCCGGACCCCCCAACAAACGTGTCAGTGCGGGGGGAGCCAGGTCGGGAGTACTGGCTCTGGTTTCAATGGGACAAGCCCAGCTCCTGGTGGACTGATTTCTACAAGCTCGAGTTTGAGCTGCGATACTGCCCCGTCCTGGATGGGGTGCCACATAACATGCTGGTTGTCAGCAACCTGAAGCAAAACAGGCACCGTATCAGCGATGCCCTACCCCACACACTCTACCTGCTGCAGGTGAGGGCCAGAGAGGAGTTCAAAAACGGCCAGTGGAGTGACTGGAGCCCCCAGGTTCAAGGACTCACCTGGAGAGGTATCAGACCCAACTGA
>TU172848
AGAATCCAGAGGTTGACACAACATAGCCTGAcactgcgctctctctctctctctctctctctctctctctctctctctctctgaggggAAGTCAACCCTTCAGTTTAGTGGAGTTGCTGATTGACAAAAGACACAGACGAGACACCTGTTCGCTTCagggtgttattttattttttaaaacatctctgTCAACGAGGAGATACAATTACCTGTCGTTTTGAAACTACAGATGTTTTGTCAACTGCCCGTTGTCATCTACGGGAATAGGCTGTAGGAGCAATGACTGTGATTTTGAaattcagttgttgttgttttttaagcgGAACACACTGAGGTGCCTATTATAATAAACAGTGCGGGAATGAGATGCTGAAGGTGAGGCTGGTTTTGCTGTCTGTGGCCGAGATGGGGTTGATGTCGGTTGGCTGtggactgtgtctgtgtctgtgtctcaccGTCACAGCCGGGAGTGAAGACATCAACCGAATGTGTCCACAAACAGTTCCTTCCAGGCAGGTCCAGGTGGTGGCCCCGGGGAGCAGGGTCATTCTGAGCTGCAATGGGACAGTTACCATTAATGGTGTGGATGTCACTGTGGACAGTGTGGATGTAGGGAACAATGGAGgcaggagagatggaggggacAACCCAGGACAGAGGAGGGACACTGGCGAAAACGAGGACAGACAGCATGGCAGGCAGGGAGTGGACATATCGAAGAGAAAGCCCAGAGGGGACCCTGATGGCACCAGGGACGGAGCTGAGAGAGTGGATGCTGTCAATAACATGGGGGGCGTGGACACACCCAATCAGACAGAGGTAGCATACAGTCCCGACACGGAAACAGTGAGCCCAACACCGGAGCTGGAGAGTATACGCAGTCCAGACCATGGGGACACAGCAGGCTCTGTGAACACACCCAGTCTGGACACCCTGGATGGGATGGAAAACATTGAGGTGGACCCTGATTTCACCATGGCAGAGGAGGGAGTGGACAGGGTGAA
>TU172849
AGTTGCTGATTGACAAAAGACACAGACGAGACACCTGTTCGCTTCagggtgttattttattttttaaaacatctctgTCAACGAGGAGATACAATTACCTGTCGTTTTGAAACTACAGATGTTTTGTCAACTGCCCGTTGTCATCTACGGGAATAGGCTGTAGGAGCAATGACTGTGATTTTGAaattcagttgttgttgttttttaagcgGAACACACTGAGGTGCCTATTATAATAAACAGTGCGGGAATGAGATGCTGAAGGTGAGGCTGGTTTTGCTGTCTGTGGCCGAGATGGGGTTGATGTCGGTTGGCTGtggactgtgtctgtgtctgtgtctcaccGTCACAGCCGGGAGTGAAGACATCAACCGAATGTGTCCACAAACAGTTCCTTCCAGGCAGGTCCAGGTGGTGGCCCCGGGGAGCAGGGTCATTCTGAGCTGCAATGGGACAGTTACCATTAATGGTGTGGATGTCACTGTGGACAGTGTGGATGTAGGGAACAATGGAGgcaggagagatggaggggacAACCCAGGACAGAGGAGGGACACTGGCGAAAACGAGGACAGACAGCATGGCAGGCAGGGAGTGGACATATCGAAGAGAAAGCCCAGAGGGGACCCTGATGGCACCAGGGACGGAGCTGAGAGAGTGGATGCTGTCAATAACATGGGGGGCGTGGACACACCCAATCAGACAGAGGTAGCATACAGTCCCGACACGGAAACAGTGAGCCCAACACCGGAGCTGGAGAGTATACGCAGTCCAGACCATGGGGACACAGCAGGCTCTGTGAACACACCCAGTCTGGACACCCTGGATGGGATGGAAAACATTGAGGTGGACCCTGATTTCACCATGGCAGAGGAGGGAGTGGACAGGGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012521 True 1553 mRNA 0.55 6 20430995 20445287
TU172848 False 1004 TUCP 0.51 2 20430925 20440670
TU172849 False 893 TUCP 0.52 2 20431036 20440670

Neighbor

gene id symbol gene type direction distance location
AMCG00012519 NA coding upstream 45169 20372680 ~ 20385756 (+)
AMCG00012515 NA coding upstream 77646 20348607 ~ 20353279 (+)
AMCG00012518 LOC107669979 coding upstream 103639 20300826 ~ 20327286 (+)
AMCG00012517 NA coding upstream 139558 20283249 ~ 20291367 (+)
AMCG00012514 NA coding upstream 190894 20239834 ~ 20240031 (+)
AMCG00012525 NA coding downstream 339332 20784619 ~ 20788119 (+)
AMCG00012532 NA coding downstream 373963 20819250 ~ 20829362 (+)
AMCG00012536 NA coding downstream 388584 20833871 ~ 20839466 (+)
AMCG00012530 NA coding downstream 398517 20843804 ~ 20847235 (+)
AMCG00012534 NA coding downstream 460769 20906056 ~ 20916631 (+)
G137364 NA non-coding upstream 102101 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 193052 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 202889 20165283 ~ 20228036 (+)
G137348 NA non-coding upstream 229121 20201551 ~ 20201804 (+)
G137242 NA non-coding upstream 637393 19788987 ~ 19793532 (+)
G137494 NA non-coding downstream 88465 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 311743 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 774912 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 786693 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 862931 21308218 ~ 21309033 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 8369 20401009 ~ 20422556 (+)
AMCG00012516 NA other upstream 86279 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 160006 20246651 ~ 20270919 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 535326 19891167 ~ 19895599 (+)
G137252 NA other upstream 615308 19814925 ~ 19815617 (+)
AMCG00012523 NA other downstream 35827 20481114 ~ 20493787 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 547203 20992490 ~ 21039749 (+)
G137583 NA other downstream 611408 21056695 ~ 21059263 (+)
G137633 NA other downstream 768310 21213597 ~ 21219163 (+)
G137636 NA other downstream 779454 21224741 ~ 21230836 (+)

Expression


Co-expression Network