AMCG00012522 (atp8b2,LOC107677029,LOC107714674)


Basic Information

Item Value
gene id AMCG00012522
gene name atp8b2,LOC107677029,LOC107714674
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20401009 ~ 20422556 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012522
ATGGCCGGCCCTAACCCCGTGGATGTTAcagaggaggagaggagagtaCGCGCCAATGATCGGGAGTACAATGAGAAGTTCCAGTACGCGAATAACTGCATCATGACCTCCAAGTACAGCATCATCACTTTCCTGCCTGTCAATCTCTTTGAGCAGTTCCAGGAAGTGGCCAACACCTACTTCCTGTTCCTGCTCATTCTGCAGCTGATCCCCCAGATCTCGTCGCTCTCCTGGTTCACCACCATCGTGCCTTTAGTCCTGGTGCTGAGTATCACTGCGGTGAAGGACGCCACTGACGACTACCTCGGAGATGCTGAGAGGCTGGCCCAGTTCAACGggGAGGTGATCTGTGAGCCTCCCAATAACAAGCTGGACCGGTTCTGTGGGACTCTGTACTGGAAGGACAGCAAGTACAGCCTTAGCAACCAGAACATGCTGCTGAGGGGCTGTGTGCTCCGCAATACGGAGAGCTGCTATGGCCTGGTCATCTTCGCAGgGCCCGACACTAAGCTGATGCAGAACAGTGGACGCACCAAGTTTAAGAGAACGAGTATCGACCGGCTGATGAACACTCTGGTGCTCTGGATCTTCGGGTTCCTGGTGTGTATGGGTGTGATCCTGGCGATTGGGAACGCGGTGTGGGAGAAGGAGGTGGGCTCGCTCTTCCAGCTCTACTTGCCCTGGGACCAGCCTGTTGACAACTTCCTGTTCTCTGGCTTCCTGTCCTTCTGGTCCTACGTCATCATCCTCAACACCGTGGTGCCCATCTCCCTCTATGTCAGtgtggaggTGATCAGACTGGGCCACAGCTATTTCATTAACTGGGACCGGCGCATGTTCTGCCAGCGCAGCCAGACCCCGGCTGAGGCGCGAAGCACCACCCTGAACGAGGAGCTGGGCCAAGTGGAGTACATCTTCTCCGACAAGACTGGTACCCTCACCCAGAACATCATGAGCTTCAACAAGTGCTCCATCAACGGCAAGGCCTACGGGGAGGTGATGGACACACTGGGGTCGCAACCCAAAATGAGAACAAGAGCAGAGCCGCTGGATTTCTCCTTTAACCCCCTGGCTGACGGCAGGTTCACCTTCTATGATGCGTCCCTGCTGGAGGCAGTGCACCTGGGCGAGCCAGCCGCCTGCGAGTTCTTCAGGCTGCTGCTGCACCCCTGCAACCAGGAGCTGCTCAACATCACCTCAGACCACCTTAATGAGTACGCTGGGGACGGTCTGCGTACGTTGGTGCTGGCATACCGGGACCTGTCAGAGGAACAGTATGAGGAGTGGGCGAGGAGGCACCGCAGCGCCAGCCGGGCCACTGACTACCGAGAGGAGAGACTGGCGGCCGTGTACGAGGAAATAGAGCAGGACATGATGctccTGGGAGCCACAGCGATTGAGGACAAGCTGCAGGAGGGTGTCCCAGAGACCATCGCCATTCTGGGTCTCGCCAACATCAAGATCTGGGTCCTGACTGGAGACAAGCAGGGGCACACCGTGCAGAGCGTCAGAGAGGAGCTGCGGCGTGCCCGGGAGCGGATGCTAGAGCTGGCGCGGGCGATGGGCAACGGCTTCGACTGGGAGGAGAAGGGCGCCCCTCCCCGGCCCCCCTCCACCCTGCTGGACACCCTGCCGGGGGAGTACGCACTGATCATCAATGGGCACAGCCTGGCACACGCCCTGGAGGTGGACATGGAGCGGGAGTTTGTGGAGACCGCCTGCGCCTGCCGCGCCGTTATCTGCTGCCGGGTCACCCCCCTGCAGAAGGCCCTGGTGGTGGAGCTGGTCAAGAGGCACAAGAGAGCCGTGACACTGGCCATCGGGGACGGGGCCAACGATGTCAGCATGATCAAGACGGCCCACATTGGAGTGGGTATCAGTGGTCAGGAGGGTATCCAGGCAGTGCTGGCGTCCGACTACTCCTTCTCTCAGTTCCGCTTCCTGCAGCGCCTCCTGCTGgACGTCCCAGAGCAGCGCAGCCTGGAGTACCCCAAGCTGTACGAGCCGGGGCAGCTCAACCTGCTCTTCAACAAGCGGGAGTTCTTCATCTGCATCGCCCAGGGCATCTACACCTCCGTGGTGCTGTTCTTTGTGCCGTGTGGCGTGTTCGCCGAGGCCACGCGGGACGACGGCACCGCCCTTGCCGACTACCAGACTTTCGCCGTCACCGTGGCAACCTCCCTCGTCATCGTGGTCAGCGTGCAGTTCAGATTCGCAGgTGCAGCTCAGAACACACTGGGTCAGCCAGTGGTGTGGCTGACCATGGCCCTGTCCACTGTGATCTGCATCGTACCTGTGGTGGCCTTCCGCTTCCTCAAACTGGATCTCAAGCCCCAGCTCTCTGACACGGTGCGCTACACCCAGCTGGTGCGCAAGAAGCAGAAGCCGGGCGCCGGGGGCCGGGGGCCGCTGGGGCGGGGTGGGCGGGCGGGTTCTCGCAGGTCGGGCTACGCCTTTGCCCACCAGGAGGGCTTCGGGGAGCTCATCACCTCAGGCAAGAACATGCGGCTGAGCTCGCTGGCCCTGTCCAGCTTCACAGGCCGCCATAGCACCAGCTGGATTGACACGCTGCGCAAGAGACGCGCCCCCCCGCCCGACAGCCCCCCTCCCGAggccccctccacccccaccaccGCCTCCGCCACACCCACGCCCTCACAGACGCCCGTGCCAGAGCCCAGCCTTACTCCCACCCAGACTCCGCCTCTGCCTGGCCTCAGCCCCGCCCTCCCCACCCCGCCAGCCAGGAGCCCAGGAGCCAGCGAAGGAGGGGGCTGGGCCGCCGCTGGGCTGGGGGCAGTGCAGGCTGCGCTGGGCTGGACTAGATTTGACTGGGCtaggctgggctgggctgggctagACTACATTGGACTCGGCTGGACTGGACAAGGCTGCAGTATAATGGACTGGACTGTGCTGCCCCAGATTGCACTGTGCTAA
>TU172823
GCCTCAGCCCCGCCCTCCCCACCCCGCCAGCCAGGAGCCCAGGAGCCAGCGAAGGAGGGGGCTGGGCCGCCGCTGGGCTGGGGGCAGTGCAGGAGGCTCTGTTTGGTTGGAGAGGGGTGGCGGCACGCATCAGTGGAGCCAGCAGCCCTGGCCCCCCCCCCATCGCAGAGGAGCCCCCCTTCACCgagcgagagtgagagagggagagggagagagagagagacagagagagagagagagaccaggactgcactgcactgcactgcactgcactgtactgcactgcgctgtattgtactgtgctgtaataCACTATTCTGAGCCCTgactgtactctactgcactgtgtCCCTACGGAGCACTGTCCATTTCCCAGGCTGTCGGGTACCTACTGTGTTTGGTCTGATTGTTGgcttgtgtgcttgtttgttttgttgacctgagagagagagatgaggtgGAGGGACATGAGAGAGAATGACAGTAATGCAGTCCTCCCTCTCTACAGTGTGCAGTGGGTGGGACTGCTTATCTGGCacagctccctccctctcttcctccctcctttcccccctccctctctcccctctgcctctttctctccttctttcccccttcctctctccactCCCCTCCTGTCTGCTCCACTGCTCTCACAGGCTGTTTGCTGAATCAGCGCCCGATTCACTGAATAATTCCCCTATGAATtaaatctccctctccctctcctctgtttctccctccatctctctcggTACAAGGGGCAGCTCTCACAGGCCCAGTAATGTAATATGCATATATGTGCCCATCTCTGCGTGTCTCCGTCTccacctgtctctctgtctccatctccgcgtgtctctgtctctgcgtgtgtatttatgtataccACTCAGATAGTTAACTCCCTGGTAGATCAATTTCTTTACCAAGTGAAAGAGTGTGAAGAACCCCCCCCAACAGCAGCCAGAATGCTAGTCTCTGCAGAATTGTTAACGCcactctgtttgtttgttctgtagTTCAGTTTAGCTGTGTGAACAGGGCAGTGAGTGTGTGCAGAagtctccctccctttctctctctctctctctctctctccctccctttttaccctctctcttcccctccctccctctctctgtgtgctgtgtgtagtgGCTGCGTGGCTGTGCGCTATATTCTCAGTGAGAACGCTGTGCAGCACAAGCTGACCGCCACTCTGCCTCCCAGACTGCGCCATATTGGTGTACTGGGCTGGACTAGGCTGCGCTGGGCTGGACTAGATTTGACTGGGCtaggctgggctgggctgggctagACTACATTGGACTCGGCTGGACTGGACAAGGCTGCAGTATAATGGACTGGACTGTGCTGCCCCAGATTGCACTGTGCTAAACTGGGTTGGACAGCCGGATTGGGGTCTGGCATGAGCAGAGCGGGACTGGACTGGGATGTACTAGAATTAAATGGACTACACTGAACTGGTCCACACGTGAGGGGGCTGCAATGAAACTGACTGGGGTGTTTTGGGACAGGAATAGTTGAACACTCTACCGTACTGGGCTGCAGTGACCCAGGATGCTCTTTGGTGGACGGGACTGAACTGGTCTACATTGGAGAGAGGGCTGCAATGGATTGGACTGGGTTGGACTATGCTGATGTAGCACCAGGCATCCCAGTTTGGTCAAAAGACAACTGGAAATCAGAACatggggtggggtggtggggaTCACATGTGGTGGggtgatttttgtgtgtgtggggagggggtttGCTCCCTCTGCAGCCTCACAAGACTTGCTAGTGAAGGTGTTAAGGAACCTTGTTTAACCATTCTGGGACCTCAGCTGAAGAGCATCAGGAGCCAAGAAGAATTTGGTCAAAGAAGCTCGTGAGGTAAAGCATCGTTGCAGAGTCtcgttaaaaaaaattaaatcttgaaAGAGGCCCTGCAGAGTCTGCCGGGGGTTAGAAGAGGAGTCTGGCATAGAAGAGCCTCATTAAGCAACCTCGTTAAGGATGGGTGGAACCCTCATTAACCAATTAAGGACCCACCTGTGGACTTTTTTACAGGACTTTAAGAAAGGCGCTTGTTTGCCTTCTTGTTAGAAAAAGCGTGTTAAGTTCTGGCCCCCATGAGGGGTGGTTGTTTTTGCCCTTTAGAGCCTGGGGGAGGGGTAAGTCAGAGTTCAGACGTTAAACTGGAGTCACTGAAACAAGCTGATCAATAAATATACCAATGACCCTCGATCACTAGAGGGAAACGTGAGTAGTCCTGGTCTCTTATTTACTGTCAGATGGTGAAACTAACACATTCCC

Function

symbol description
atp8b2 Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP8B2 (ATPase phospholipid transporting 8B2).

NR:

description
PREDICTED: phospholipid-transporting ATPase ID isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012522 True 2940 mRNA 0.62 23 20401009 20421632
TU172823 False 2325 lncRNA 0.53 2 20420130 20422556

Neighbor

gene id symbol gene type direction distance location
AMCG00012519 NA coding upstream 15253 20372680 ~ 20385756 (+)
AMCG00012515 NA coding upstream 47730 20348607 ~ 20353279 (+)
AMCG00012518 LOC107669979 coding upstream 73723 20300826 ~ 20327286 (+)
AMCG00012517 NA coding upstream 109642 20283249 ~ 20291367 (+)
AMCG00012514 NA coding upstream 160978 20239834 ~ 20240031 (+)
AMCG00012525 NA coding downstream 362063 20784619 ~ 20788119 (+)
AMCG00012532 NA coding downstream 396694 20819250 ~ 20829362 (+)
AMCG00012536 NA coding downstream 411315 20833871 ~ 20839466 (+)
AMCG00012530 NA coding downstream 421248 20843804 ~ 20847235 (+)
AMCG00012534 NA coding downstream 483500 20906056 ~ 20916631 (+)
G137364 NA non-coding upstream 72185 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 163136 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 172973 20165283 ~ 20228036 (+)
G137348 NA non-coding upstream 199205 20201551 ~ 20201804 (+)
G137242 NA non-coding upstream 607477 19788987 ~ 19793532 (+)
G137494 NA non-coding downstream 111196 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 334474 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 797643 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 809424 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 885662 21308218 ~ 21309033 (+)
AMCG00012516 NA other upstream 56363 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 130090 20246651 ~ 20270919 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 505410 19891167 ~ 19895599 (+)
G137252 NA other upstream 585392 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 1050807 19332328 ~ 19350202 (+)
AMCG00012521 NA other downstream 8369 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 58558 20481114 ~ 20493787 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 569934 20992490 ~ 21039749 (+)
G137583 NA other downstream 634139 21056695 ~ 21059263 (+)
G137633 NA other downstream 791041 21213597 ~ 21219163 (+)

Expression


Co-expression Network