AMCG00012523


Basic Information

Item Value
gene id AMCG00012523
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20481114 ~ 20493787 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012523
AATACCACCTTCCGCCATGTGCTCACGAGCTGCACAGACATCCAGGCTGAGGACGGGGCCTACATCTACCAGTTGCCCAAGGACATTGCTGACAAGGCCGTGGACATGTCCTGTGAAGCCAGTTGGTCAACTGTGGAGAAGGTGGTGGCCCATGGGGGGGGTGGTGATTTGGATAAATGGGAGGAGCCAGTAATAAAGATGGACAACACCCACCTGACCACAGAGATCTGCACACCCACTCTCACCTACCAACTGGACTGTGCCCAGTTGTCACTCGCAGCCGCCGCACTCACAGCCATGGCGCAGAGCAGCGGCCTAGAGCGGCCTGACATCGGCGCCCTGAACCCCGAGCAACAGGAGAGACTGCGGCAGTTCAAGataaaaacaagaatCGCTAATGAGACATATGTAAGATCTCACCCAGAGGTCGAGCTACTTCTGAGTGAGTTTTTAAGAGAAGTTTTCTTGAAGAGACCAGTGGACATTCGAGAATTTGCTGCAGATCATTTCACTGACCCGGACTTGCCGGACAGAGTGCGCGTGAAACTGGAGAAGGCTTCAGAGTGA
>TU172869
GACATGTTAAAATCCCACTACttggaatatacaaaacatGGGAAAGAGCTAACAAGGCTAAGTAGGGCTAATCAAGGCGAAGGAGAATACAAAGCCATGGAGTAGCGGCGACCTCTGTTGGTGATGTTAGGGAATTCTTGGGGATGTCACGGACGTACAGCACTGAACAGAGAGATGTCTACAATAGCAAAGACTGAGCTTTGTTTGATACTAAACATCACGGCTTTCAGCACCGGCTTGACAAACAACTATTATGTTTAAGAGCTACTGAACTTTACGTCTTTTTCTGATAGAATGCATGTAAAATAGTGCTTTcaagaaataaacagtttttacCACTTTACGCATTATTTTGGAAAACTTTCAGTTGAAGTTTTAAAAGTTAAGATGTTCTAGTATCCGAAAACACTGAAAACTCTATTGAGAACACGACTGGTTTTGTGGTGGAACgtcacatattttcttttactttttgtaatCATTGAATGTATCAATAATCAATTATCACTTTGCAGCAGCATTTACAACTAGTCAGCAGATTATTCATGTTGTCATTGATcctccctgctaacacacaatgttgccacaacgttgtagcaaccTAAATTACGTGTTAGCTGGGGTAACATTTTGTTGGCTAGTTATCTGCTTCCATCgtgttgatttcaaagctgATTCCGATTGAAAATTACTTCGATAATTAATAGCTGGCTTGTTGCATGGATTGAGGTCATACACACGCATCACTAGACACAACAGGTGAGGTGAATTACATAACGTCTGTAACATACTTCTACCTTGTGCCttcttgttttgtaaatatatatgtcataTTTTTGTGGCCTTTTGATATTCTGGGCCACTAGGCGACCGATAGTCCGCCTGTACCTTTGTCCGGCCCTGGTGACGTGAGGGGGGGGAAATGAAAACGGTAGAAGTATTTGTTTCATCCTCATTgccttctctgtgtgtgtgaatctgtGAGTTTTTCCCGCTTTGATTACAGTCAGATCGGATAATAAACTGGCTATATGACTGTATTGCTGCTACACCGTCCTGTATTCGTGGTCGCTGTGCTGTCGTCTATGCGTCAGCTTTTCTATCAAACATACCTGCTATTATTATACTACAGCTGCTATACTAACCTACTTACTTTTACATACTACCCCAGtacaaaatgattattattatgtttatttcttggcagacgcccttatccagggcgacataaCAACATACGTGCAatcaaagtgcaagaatacagttcagtacatcaaacattacaaattaaaatttacattatacaaagcaatttaaagtaaaatacattttacaacttccaatttacacaggcatgTACAGTAAGTGCGgccctacatcctggacagtaaaagctaagtgctgtcaagatgtaggtcacagtcaagggctacgggaaagggagcaagggtgaaaaatcaataatacaagtattagtaacgcaagaagcatgatagtAAAGTGCTAATCTAACCGGGATATGAAGGACtcatattacaagtactgtctgatgtgtcttgagtaagcgctggaatgagatcaaggactctgctgtttttactgttttgtgtttgacttcatttaggggtcagggatgagaaggagcgccTCTGGAGGAAGGATAGTGGAGAGGAGTCACAGTCATACTACTTCGACATTTTTTAACTGTAGTACCTTGAAAATATGTCATATCCAGCAGCATATCATACCAAAAGTACTGCGACATGCAGAAACGgtatcttcagatactttaaagTCTTGTTTGTAGTATAACTGCATTTATAGAATATTGAGGCGACTAATACTATGCACTGCCCCACGTTTGGCGATAAATGTACAGTACGTCACGTTTAGAGTTGATCTTTTCAATGACTTGATCTTTTCCACACACATACCAAACAATCCAGTCAGAtctgcgcaggcgcacaggcaGCACTCAGACCCGCGTCGCCGCCATCACCTCCAAGGTTTCCACGTTGGCATGGTAACAGTTGTCACTCGCAGCCGCCGCACTCACAGCCATGGCGCAGAGCAGCGGCCTAGAGCGGCCTGACATCGGCGCCCTGAACCCCGAGCAACAGGAGAGACTGCGGCAGTTCAAGataaaaacaagaatCGCTAATGAGACATATGTAAGATCTCACCCAGAGGTCGAGCTACTTCTGAGTGAGTTTTTAAGAGAAGTTTTCTTGAAGAGACCAGTGGACATTCGAGAATTTGCTGCAGATCATTTCACTGACCCGGACTTGCCGGACAGAGTGCGCGTGAAACTGGAGAAGGCTTCAGAGTGACTGCAGCCGTCAAACTTGTATTAAACCTAAATTGCACAAAATCAGTGTCTTGTACTGAtcctttccctgtgtgtctaaTGGGTCATGGACGCCAGCCCTGGTATAGTAgggtgtagtgtagtataggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012523 False 567 mRNA 0.54 6 20481114 20493659
TU172869 True 2458 lncRNA 0.42 4 20489764 20493787

Neighbor

gene id symbol gene type direction distance location
AMCG00012519 NA coding upstream 95358 20372680 ~ 20385756 (+)
AMCG00012515 NA coding upstream 127835 20348607 ~ 20353279 (+)
AMCG00012518 LOC107669979 coding upstream 153828 20300826 ~ 20327286 (+)
AMCG00012517 NA coding upstream 189747 20283249 ~ 20291367 (+)
AMCG00012514 NA coding upstream 241083 20239834 ~ 20240031 (+)
AMCG00012525 NA coding downstream 290832 20784619 ~ 20788119 (+)
AMCG00012532 NA coding downstream 325463 20819250 ~ 20829362 (+)
AMCG00012536 NA coding downstream 340084 20833871 ~ 20839466 (+)
AMCG00012530 NA coding downstream 350017 20843804 ~ 20847235 (+)
AMCG00012534 NA coding downstream 412269 20906056 ~ 20916631 (+)
G137364 NA non-coding upstream 152290 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 243241 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 253078 20165283 ~ 20228036 (+)
G137348 NA non-coding upstream 279310 20201551 ~ 20201804 (+)
G137242 NA non-coding upstream 687582 19788987 ~ 19793532 (+)
G137494 NA non-coding downstream 39965 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 263243 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 726412 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 738193 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 814431 21308218 ~ 21309033 (+)
AMCG00012521 NA other upstream 35827 20430925 ~ 20445287 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 58558 20401009 ~ 20422556 (+)
AMCG00012516 NA other upstream 136468 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 210195 20246651 ~ 20270919 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 585515 19891167 ~ 19895599 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 498703 20992490 ~ 21039749 (+)
G137583 NA other downstream 562908 21056695 ~ 21059263 (+)
G137633 NA other downstream 719810 21213597 ~ 21219163 (+)
G137636 NA other downstream 730954 21224741 ~ 21230836 (+)
AMCG00012546 NA other downstream 751876 21245663 ~ 21253003 (+)

Expression


Co-expression Network