AMCG00012524


Basic Information

Item Value
gene id AMCG00012524
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20703429 ~ 20742998 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012524
CTTAACCTGGGTTCTCAATATCCAAAGTGCTCAGAACACACCAGAGCATGGGAATAACCCTACACTGACAGACTGCTGCTGTAAATGACTGTCCAGCAAAGGAACAAACACCAAAAGACCCATCAGACTTGCCTGCTTGTGTAAGGGAGAGTAAAAGGGAAGGGGTTTCTGTTATTTGAAGGAAACAAATCATAGCAGAAGAACCGTGGCAATTGACATGGGTTTAGGAGGGGGGGCCAGGGGAGTCCTAGCCTTGGCACTCCTCAGCCTGGCAGTGCCAGCGGTAGAGAGATGCCCCAGTGCCTGCCGCTGCTCTTTCTCCAACCTGCAGTGTTCTGAGTCGGACACCATCGTGGGCATGCCAGTGCTGCCCTTCCATGAGAGCGAGAATGTGACGGAGATCTACATTGAAAACCAAAGGGACTTGGTCAATATTACAGAAATGGACCTTGCTTACTACAGGGAGCTGAAAAACCTCACTGTTACCAACTGTGGATTGACGCACATCTCCGTAAGGGCTTTTCAGTACAACCCCAAGCTCCAGTATGTGGTTCTGAAGGACAACCCCCTGCTCTGCTCCTGCGACATCCATTGGCTGCAGCAGTGGCAGATTACAGGACGGGCAGATCTTTCGAACCAATCACTGAGCTGCCACTCTGAGGGTCGCGACCACCCAGTAGCAGGGGCGGTGATGGAGAACTGCAGTGTGCCCGAAGTGACGATCACTTATCCCCAGTTGAGAGTGAAGGAGGGAGGCAATCTGACCTTCACCTGCCACGTGTCTGGCACCCCCATGCCTACCGTAAGCTGGCTCACAGAGGGCCTGCAGTCCCAGTTCACTCTCCAGGAGTGGAGGAGTGGTTACACTCAAGAGCTGGTTTTGCAATTGGTCAACGTCTCCTACAGGGATAATCTCTACAACCTGACCTGCCAGGCTGAGAACAGGGCTGGACCTGGGGAGGATGTCGTGCAACTTGATATCTTATATGCTGAGTCCCAGCATCACTGGTGTTTCCCCTTCGCTGTGGATGGGAACCCGGCCCCGAGTATCCGTTGGCTTTACAATGGCTTCAGTCTGGCCGAAACTCGCTTCACCTTCACCCAGCTGATCGCCGATGCAGAAGATGGGTCAGTCCTCCACGGCTGCCTGTCCCTCAACAAGCCCACCCACCTCAACAACGGCAACTACACGCTGATCGTGGATAACGGGCTGGGCTCAGATTCCGCCACGGCAACCGGCATGTTCATGGACAACCCGTTTGATGATCTGGAGGGTCTCATACCAGCCCCCACCAGCAAGTCTCCAGAGGGCGTCACTGAAAATGTAGAGAACAGGACGTTTGGGGTGTCCGTGGCCGTGGGGCTAGCTGTGTTCGCCTGCACTTTCATTCTCATCCTGCTGGTCGTCCTGAACAAATGTGGCCGCCAGTCCAAATTTGGGATCCATCGGGCAGCAGTGCTGGGGACAGATGATGACCTGGCGGTCTCCCTCCACTTCTTGAATTTCGGAGCCAGCCCCCCCTCCTCAGCCGAAGACTCCGGCCTCTCCAGCTTCATCGAGAACCCCCAGTATTTCTGTGGCATCGTCAAAGACAAGGACATGTGTGTGCAGTACATTAAGCGGAGGGATATTGTGCTGAAATGGGAGCTGGGAGAGGGGGCTTTCGGGAAGACATTAAAAGACGCCAACACATCCACCAGGCAGGACTTCCAGCGAGAAGCGGAGCTGCTGACAGTCCTGCAGCATGAACACATTGTGCGTTTCTATGGTGTGTGCACCGACGGAGAGCCGCTGGCCATGGTTTTTGAGTACATGAAACACGGAGACCTGAATCGCTTCCTCAGGGCTCATGGACCAGATGCCAAGATTTTGGATGAGGGTAAAGTGCCCCCTCTTGGGCAACTGACCCTGCCCCAGATGCTACAGATCGCAGCCCAGATCGCGTCAGGAATGGTGTACCTGGCCTCCCTTCACTTTGTGCACAGAGACCTGGCCACCAGGAACTGTCTGGTGGGAGAGGGGCTGGTGGTGGGTGGCCGCACTATGCTCCCTATTCGCTGGATGCCCCCTGAGAGCATCATGTACAGGAAGTTCACCACAGAGAGTGACATCTGGAGCTTTGGAGTTGCTATAGAGTGCATCACCCAGGGGAGAGAGCTGGAAAGGCCAAGAACCTGCCCCAAAGAAGTGCATCTGATCATGCAGGGTTGCTGGCAGAGGGAGCCCCAACAGAGACTCAACATCAAAGACATCTACAACCGTCTCACTACCTTGGTGAAGAGCCCCCCAGTCTACCTAGACATCCTGGAGTAGCCCCCTACCCCCCTCAAATCCTCAAAAGAGGAGGAGCCCTGACTGGGGTGTCGGCGTAGGGGGTGGGTGGCTGGGTGATTGTAGAGATCTAGCTTAGCACCTCCCATCCCCTCTACATCCCCCACTTCACCCTTCTAACCCCCATCCCCAGTTAAGAACCAAGAAAAGGAGACCCAAATTCTGCCAGATGTCGCTTGTTTGGTTGCCAGATGTGAGGATCTCATCCAGCTGTTTCTTAGCTAAGGATCGTAGGGAATCTGCTCCACCAACATGTCTGTGTCACTTCGTCCAGACACCCACCCACGATCTGTGTAAAGTCATCTCCATCTTCTCAATTTCCAACTGggtctttctttcctttttcaggGTAATGCAGTCCTCCTCTTCCATTCATACCTTTCTGTACCTGCAGTCACATGCCTGTAAGGAACAGCTGGGTTTGTCCCAGTGAATGTCAATCTTCTGGTCTTAAAGTAAAGAGATACTGATGACTATGGAGCTGAAACCTCACATTCCTGGTCTTCAATCAGTCTGGAGGGGGTCAAGTGCAAGAcctctgtatttttcttttgaaaagaaaatataatttactgagATTTCTGGAAAATGTGGAAGTGATGGGGCCTCTTATTCTCAGAGCAGAGGGACCAGGAAATATACAAAGGGGAACGGCAATCCAGGCTTCATGCTGAGGAACTAGcaagggggggaagaaaagagagagggatgggggagatttattttaattggagtgacattatatattttacagacaaacaaaaggTCTCTTAAATGTTCCGTCTTTCCCTGACTCCCGCCAGCACTAAGAGATCTGTTGTTTCCCTTGGCACTTGATGTGCTGTTGTATTATCATGTGGAGTGCAGCACAAGAACAAACCAGTTTATCTTTAATTGATCAGTGCATAGGAAAAGTCACACCAAGGCTGGCACTAATCCCTTGTAGAATCTCACTCTTTCATTGGAGGGTCCCAGAAAGCCAGCTTCAGCTACATGTGTGTGTAGCTTCTTCCAGACCGCCGCGGCTCTTTGCATAACAAAGTGCTTGTTTTCTGTCTGATACGCACCTATTCTTGATATCCTACCTTGTGACCTTTGTTCCTTGCCTCGCTGGAGTAATGCTCGGGGGTCGACGGTATTTATGAATCCTTGAATCAAATGCCATCTGTCTAAACAGACTGAAGAGGTTTCATTCTTTAAAACCTTTGGTTACTCTTGTCCGACCTCTCCCCGGCGGCAGGAATGTTCTTGTGGTGTGGCGaccaaaactgcaaaaaaaatttttttaaatggcttgtTTGTATCTCTCCCTGTTAGAGTTAAATCAGTGATATAGAGTGGCCGTTGTAAAAGACTGGCGAGAATGCAAATGGTCTCCCAATGGCTAAAGAGGTCTGAATCTTGAGTAGCAGGTTGTAGGATTATAATTAGTCTCGTTTGTGAATGAGGCTTTGGGAACTGTTCCTATTCCTTGCCTaccattaattttaattgtgtgcagtgtgctcagTCCTTCAGATGGCTGCCATTGAATCCATTTAACCTCCCTCTAACACCCTACGTGCCTAGGTGTTATAATTGTGTCTTAGTATTGCATCAGGATATCATACTGTGCAACAGCATAGCATGCAattacagtatagtgtagtgtcaCTGTGCagactttctttttctctgttaCCTGGAAATCGGCTGTCTTATATTCCTTTTTGATAGGGTGATAGCTGGAAAACTGATATGCAGTGTGAAATCTCCCACAGATTAGTACCTCATCTCCTCCCAGACTTAATCCGAAAACCCCAATAATATTTCATAAGAAGTTATTTTGCTCTCTGGCTTTCGGGGCCATTCCTGTGCCTTCAGTATGTCAGACACTGGTTCTACAACACAGGCATGTGTTTGACtactcattatttaattattctatatacatatacaacagctgccagatatgtttttttctttctgaaatgtggattaatttatttcagtgcactctgtgtgctattttaatatattgaatgAATGTGTTCCCAACGTGTTCCAAAATCAAACTGATGTCATGGCGCcttcttttgtttagtttcgGACTCGTTGGTGGCCTGATTTTTTTGTGAAGATCTACTCTCACAACACTGACAGAGTTGAAGGCTGGGGCGGGGGGTTTAATGGCATGGCACATGGATCTGAAGGCGATTGCTTAAGTTGTAAAAGGCAGTGCAACACGCATTGTCTTCCCCCAGCCACTTCCTCTGACTGAGAGAATCCTGCTTGGAAGCTGTTTATGCTGGAATTCcagaatcaaaagaaaaaaaatagaaaagattAATCAAAGATCAGGAAAATTGCAGTCTGGAACTAATTAAACGTAACGCTAATCACGTGATGTCACGGTTCCCCAgtactcaccctctctctccactagaggctGCTATTACCTTGTCTTTCCCTGTCCCTTCTCCCAGCTCCTGTCaatcagtctattaacattccggtcttGTTCACTCTCCCTATGTTCCTATTCATCCTGCACCTTCCCACCTGGTTTCCTGTGCCCtatataatcccctcacttccctcactcGGGGCGAAGTTTTGACAGTAGTCACTGCAATCCTGAGCCTTGTTCCCGTGTCCTCTCCTAGAGCCCTGTATCTCCGTGCCTGGTATCTGTGTTTCCTTGAACCCTCGCCTGACTTTCCGACCAcgactctgtctctcccttgcTGCCTTGTTTTCCCAATCCCACGACCCACGCCTGTGACCTCAACCACGTCTCTGTctagcctccattgccctgatccGCTTGCTCCCGACCCGCGCCTGTCCGACCacgcactgcacttgggtcccctgttcccgaggtGCAACCGTGACACGTGATAAGTGAGAAGGAACTGAAGAACTGCAGCTCCGCAGGACAGTGAATAAAATACTAGAAGCCTTGATTTTGTACTATATTGTAATATAGGTGTGAATCTCAGCCTGTGACCAAATTAATTCGACCAACCACTTAGGAGTCTCTTATaaataaagtgctttaaaaCTGGTTCAATTACA

Function

GO: NA

KEGG:

id description
K03176 NTRK1, TRKA; neurotrophic tyrosine kinase receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012524 True 5392 mRNA 0.49 15 20703429 20742998

Neighbor

gene id symbol gene type direction distance location
AMCG00012520 NA coding downstream 406368 20292730 ~ 20297061 (-)
AMCG00012507 smg5 coding downstream 524465 20168155 ~ 20178964 (-)
AMCG00012508 paqr6,LOC107728479,LOC107688246 coding downstream 546217 20147777 ~ 20157212 (-)
AMCG00012509 NA coding downstream 584864 20113894 ~ 20118565 (-)
AMCG00012510 NA coding downstream 590293 20108162 ~ 20113136 (-)
AMCG00012526 NA coding upstream 89943 20832941 ~ 20834492 (-)
AMCG00012528 NA coding upstream 115727 20858725 ~ 20859203 (-)
AMCG00012527 NA coding upstream 116267 20859265 ~ 20862618 (-)
AMCG00012537 NA coding upstream 158726 20901724 ~ 20905761 (-)
AMCG00012545 NA coding upstream 377118 21120116 ~ 21121378 (-)
G137517 NA non-coding downstream 125586 20569818 ~ 20577843 (-)
G137518 NA non-coding downstream 151284 20542765 ~ 20552145 (-)
G137495 NA non-coding downstream 166235 20536948 ~ 20537194 (-)
G137472 NA non-coding downstream 279749 20423387 ~ 20423680 (-)
G137449 NA non-coding downstream 325476 20376443 ~ 20377953 (-)
G137558 NA non-coding upstream 76327 20819325 ~ 20829367 (-)
G137559 NA non-coding upstream 90001 20832999 ~ 20916282 (-)
G137591 NA non-coding upstream 208940 20951938 ~ 20956378 (-)
G137605 NA non-coding upstream 287094 21030092 ~ 21093996 (-)
G137601 NA non-coding upstream 291532 21034530 ~ 21039767 (-)
G137408 NA other downstream 432565 20261002 ~ 20270864 (-)
AMCG00012503 NA other downstream 793051 19903106 ~ 19910378 (-)
G137246 NA other downstream 909898 19714162 ~ 19793531 (-)
G137199 NA other downstream 1196035 19441927 ~ 19507394 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other downstream 1659980 19032603 ~ 19043449 (-)
G137608 NA other upstream 292165 21035163 ~ 21038431 (-)
AMCG00012541 NA other upstream 297091 21040089 ~ 21042443 (-)
AMCG00012559 NA other upstream 690666 21433664 ~ 21635426 (-)
AMCG00012556 NA other upstream 751229 21494227 ~ 21502199 (-)
AMCG00012564 NA other upstream 1335175 22078173 ~ 22088469 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010225 NA non-coding NC_007127.7 CM002900.2 45787042 ~ 45812324 (+)
grasscarp (Ctenopharyngodon idella) CI01000027_01546280_01571152 NTRK1 coding CI01000027 null 1545743 ~ 1571220 (+)