AMCG00012533 (rbm8a)


Basic Information

Item Value
gene id AMCG00012533
gene name rbm8a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20951848 ~ 20956923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012533
CCCCCTCAAAAAAACGCAAGACCTCCAGCATCCCAGCGTCCAGTGCGCTATAAACAACAGTCGCAGATACGCgctgagacacaaacacaacgCGGACAAGATGGCGGACGTGCTGGACCTACACGAAGCGGGGGGCGAGGATTTTCCTATGGATGAGGATGAAAGCATCCACAAGCTGAAGGAGAAGGCGAAGAGGCGGAAAGGACGAGGCTTTGGATCCGAGGAAGGTGCGCGCTCCAGGGTGCGGGAGGACTATGACACAGTAGAGCAGGATGGGGACGAGCCAGGCCCACAGAGATCGGTGGAGGGCTGGATCCTGTTTGTCACGGGCGTGCACGAGGAAGCCACCGAAGAGGACATCCACGACAAGTTTGCAGAGTTCGGAGAAATCAAGAATCTGCATCTGAACTTGGACCGGAGGACAGGCTACCTGAAGGGTTATGCGCTGGTAGAGTACGAGACCTACAAAGAGGCCCAGGCTGCTATGGAAGGGTTAAACGGTCAAGATCTCATGGGTCAGCCAATCAGTGTGGACTGGGGCTTCGGGTGGGAGGAGACGGAGCAGGAGCCCAGACAGGAGGCGCCGCTGAGCCCCACAGTGCAGAGAACCAAGCTGCGGACTGGGGCTTCCGGATGGAAGACGGCAGAAGGCACGTTCCCCGCTCAACAGTGCGGTTTCCCGGTCCGCTTGAACTACCAGGACAAGTGTTCCCGGCTGCTGGTGCTATCTGTGCCGTTTGCCAGGAAACCCTTTAACGGCAGGCTGATCCTTACAGACGCCACGGGGGGATTGGGTTGA

Function

symbol description
rbm8a Predicted to enable mRNA binding activity. Predicted to be involved in RNA splicing and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and exon-exon junction complex. Human ortholog(s) of this gene implicated in thrombocytopenia-absent radius syndrome. Orthologous to human RBM8A (RNA binding motif protein 8A).

NR:

description
RNA-binding protein 8A

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12876 RBM8A, Y14; RNA-binding protein 8A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012533 True 799 mRNA 0.58 7 20951848 20956923

Neighbor

gene id symbol gene type direction distance location
AMCG00012529 lix1l,LOC106588578,LOC106570188 coding upstream 1394 20940980 ~ 20950454 (+)
AMCG00012535 lix1l,LOC106570188,LOC106588578 coding upstream 21464 20924466 ~ 20930384 (+)
AMCG00012531 NA coding upstream 29940 20919707 ~ 20921908 (+)
AMCG00012534 NA coding upstream 35217 20906056 ~ 20916631 (+)
AMCG00012530 NA coding upstream 104613 20843804 ~ 20847235 (+)
AMCG00012540 NA coding downstream 56498 21013421 ~ 21038429 (+)
AMCG00012538 sf3b4 coding downstream 87326 21044249 ~ 21050805 (+)
AMCG00012544 sv2a,LOC107592174 coding downstream 148196 21105119 ~ 21109248 (+)
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding downstream 152615 21109538 ~ 21112947 (+)
AMCG00012542 nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836 coding downstream 191315 21148238 ~ 21166777 (+)
G137539 NA non-coding upstream 194584 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 417889 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 623024 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 713975 20170426 ~ 20237873 (+)
G137634 NA non-coding downstream 263276 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 275057 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 351295 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 645076 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 823143 21780066 ~ 21786045 (+)
AMCG00012523 NA other upstream 458061 20481114 ~ 20493787 (+)
AMCG00012521 NA other upstream 506561 20430925 ~ 20445287 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 529292 20401009 ~ 20422556 (+)
AMCG00012516 NA other upstream 607202 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 680929 20246651 ~ 20270919 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 35567 20992490 ~ 21039749 (+)
G137583 NA other downstream 99772 21056695 ~ 21059263 (+)
G137633 NA other downstream 256674 21213597 ~ 21219163 (+)
G137636 NA other downstream 267818 21224741 ~ 21230836 (+)
AMCG00012546 NA other downstream 288740 21245663 ~ 21253003 (+)

Expression


Co-expression Network