AMCG00012539 (otud7b,LOC106581836)


Basic Information

Item Value
gene id AMCG00012539
gene name otud7b,LOC106581836
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20992490 ~ 21039749 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012539
GGTGTGGCTGTGAGAGGCAGTCTGAAGCGGAGGAGAGATCcaaccctccctcccccccccacccctctcagTCGGTGATCTGGGGCCGAATTTTTTCTCGCTTCAGCCGGCGCCGCTCCACTCCGAATTCATGATCACATGACCTTGGATATGGACGCTGTCCTGTCCGACTTTGTCCGATCCACAGGGGCTGAGCCGGGGCTGGCCAGAGACCTCCTAGAAGGCAAGAACTGGGATCTGAGTGCCGCTCTCAGCGACTTCGAGCAGCTCCGGCAGGTGCATGCTGGGAACCTGCCCTACTCCTTCGCAGAGGAAAGGGGCTTCCGGAACCCAGAGAAAGAGCTGGCCAGGTCGGGGGGGCGCCCACTGCTGCACAGACAGGACGACATGGTACAAGaGAAGCGACTGTCCCGTGGCATCTCCCACGCCAGCTCGACCATCGTGTCCCTGGCGCGCTCCCACGTCTCCAGCACGggtggcagcagcagtgagcCGCTCCTGGACACCCCCCTGTGCACCTTCCAGCTGCCCGACCTCACCATCTACAGGGAGGAGTTCCGCGGCTTCATCGAGAGGGACCTGATCGAGCAGTCCATGATGGTGGCCCTGGAGCACGCAGgtCGTCTGAACTGGTGGACACGAGTGGGAGCCAGCTGTCAGAGCCTGTTACCCTTGGCTACAACAGGCGATGGAAACTGCCTCCTGCATGCTGCCTCACTAGGGATGTGGGGTTTCCATGACCGGGACCTAATGCTGCGCAAGTCTCTATACACCCTGATGGACAAGGGCCTGGAGAAGGAGGCACTGAGACGTCGCTGGAGGTGGCAGCAGACCCAGCAGAACAAAGAGTCCGGCCTGGTGTACACGGAGGATGAGTGGCAGAAGGAGTGGAACGAGTTACTGAAGCTGGCCTCCAGCGAGCCCAGGATACACTACAGCACCAACGGGCCCAGCTGTGCAGGGGCGGAGTCTTTAGAGGAGCCAGTCTATGAGAGTCTGGAGGAGTTCCACGTGTTCGTCCTAGCACACGTTCTGCGCCGGCCCATCGTGGTCGTAGCGGATACCATGCTGAGAGACTCTGGAGGGGAAgCCTTTGCGCCCATCCCATTTGGAGGCATCTACCTTCCCCTGGAGGTGCCCTCAGCCAAGTCTGTGATCCCGCTGACCGACTCCGAGCACAAGCTACTGCCCGTCCACTTCGCGGTGGACCCCGGGAGAGACTGGGAGTGGGGCAAAGATGACGTAGACAACGTGAGGCTAGCCAGTGTGACGCTGTCTCTAGAGGCCAAACTCAACTTACTGCACAACTACATGACTGTGACGTGGCTGCCTCTCCCTTGTGAGGCTCAGCAAGCCCCGCTGGCTCAGCCCGAATCCCCCACAGCCTCCGCGGGGGACGAGGCCCGGACGCCCCTGGACTCGGGCGAGTCGGACAAGGAGTCGGTGTGCAGCAGCTCCAACGGCGGAGGTGGGGGCAGCTCGGCACCTGGCTCGGGAGGCGCTGCCAACGGGAGCAGCAGCACGGCGCCAGTCTTGGGGAAGGCAGCcggctccagctcctccagctcaTCCAGCAGCTCGTCCAGCTCCAGCTCGGGGGGCAAGGAGAAGGCCAAGAAGGACAAGGACAAGAAGAGGGCCGACTCGGTGGCCAACAAGCTGGGCAGCTTCGGCAAGAGCCTGGGCAGCAAGCTGAAGAAGAACGTGGGTGGCCTGATGACGGGCAAGACGGCGGGCGGCAGCGGGAGCAAGCAGGCTGGGGAGACactggagaagaagaagaagggatCGCTGAAGGGCCGCAAGGGCAGCAAGGAGGGATCGCCCTCCGCCCAAGGAGGAAAGGAGACGGGCTCGGGGAAGGGCTCCCCCTCCTCCGGCAGCGAGCGGCAGGCCGGAGACCCCTACAAGTACAGCACGGATGTCAAGCTGACCCTCAGCATCCTGCGGGCCGCCATGCAGGGCGAGAGGAAGTTCATCTTCGCCGGCCTGCTCACCACCAGCAACCGGCAGCCCTTCCAGGAGGAGATGATCCAGCGCTACCTGGCCGACGCCGAGGAGCGCTTCCGGGCCGAGCAGGAGCAGAGGAGGGAGGCGGAGCGGAAGGAGCGGCTGGGGGGCCCCGCCACCCCCACGGGCGCAGCACTCAACGGGGCCCCGAAGGAAGGGGCCGGGACAGAGACGGGCTTCCGCTGCTACGACCCCAAGGACGACCCCCGAGGCGGCTCGCCTCCCCCGTCCTTCAACCACCCGGCCCTCAAGCCCTTCTCGCCCGCCTTCTCCGGGGTCCTCACCATCCCCCGGCCCAGCGTGGTCACCCCCGGCGCCCACCTCCACGGCCAGCCGCCCAGCTACCTGGAGACGCGGCGCCAGCTGGCCGggggctcctcctcctcctccggccCCTCGTCCTCATACAGCGGCCTGCCCTCGTATGCCACGCTGCCCCGCCACTGCCCTCTGGCGCAGGGCCCTCCTCACCCGCAGTACCACCCACCCTCGGGCAGCCCCTCCCGGGCGGGCCGCTGCTTCTCACCTGCACCGCAGGAAGAGGAGCAGCTCCCGCCCCCTGACTACCCCACCCTGGAGCCCGGGGGCGAGGCGGGCTACAGCAATGGCTACAGGGAAGCCCGGCGGAGCTCAGACAGCCGTAATGCAACCCCCCCGGGGCGGCACTTTTCCGCCGGGGGCGGGGCTCAGCCCACCAAATGCAAAACTCCCACGTGCGCCTACTACGGGCACCCAGAGACCAGCAACTACTGCTCGTACTGCTACCGAGAGGAGCTCAGACGAAGGGAAGCGGAGCCGGCCGTACACAGGTTCTGAAGCCACGCCcacatctccctctctctctctctctctctctcacacccgTTCTCGACTAGGGAGGTATTTATACAAGCCCTCGCCACTGCCCTGCCCTCTTTCCAGATCCAGTACTGACAAACCAGAAAGAGAattgcccctctctctccatgccTGTTACTGGAAATGCAATAAGAATCGAAAAGCGATAGTAATAATCCAATTCATTCTATTAAGACTCATTAATGTCTTATCAATCAGGCCATGAGGGACACATGGAGAGGGGGTTTCCCGGTGAATTATGGAAGATGGGAAAGGAGgtcattttgtttggtttttttgtccattttatttctctgttctAAGTCCACCTAGTTTCAAGTGGTTTCATGTTTGCTTGCTGATTTTCTTGCGCAGGTTTGTTTAAGTCAAACCCCTCCAGACCTTCATCACTCCTGTTCTCCAGCCCCTGGTGCCGTTTTCAGGGGTCGGGTGTGAACTGCCATATGTTCTTTGTATATCCACAGCCCTActgcttttaaataacaaaGTGTCTATCATTTCTTATCAACAAGCCCAGCTGGTCTCTTGAAAAGCCCCCTGTCCCAGAGCACCACCCAGTGGAGAGCATTTGTATGTGCAAGTAATACTCACAGAGCAGTATCTAATAGTCTtgcgcaaaaaaaaaaagttaacgaCCCCACGATGCACGAAAAGCTACCAAGAAACAGGTAGAAACGGCTCGGAAAATGAAAGCAGGCGAGATATTCCTGTTTGAGTAATGTCCTCAGATATTGGTGAACTTCATTTGTCAAGAGGGAACCTACTCCAGGCCTAATAATAGACACAAAACTATGAAAAATCTGCGTATTTTGTAACGGGGAAACCTTCGAATGGCACCCTGTGGTACAGAGAGTGCAATGCGTCTGGACTACTATGCAATCCCTAAGCCTCCTGGGGCGAGAGAGACCTCTTTGCCTTCTAACATGCACCTGTTGAGGGCATTGTCCAGTGATCAGCAGCACAGTTCCAGTGGTGGTCCTGTTAGAGTTGATTGACATGTGATTGTGATTGAGCTGTCTCCGGTGGGGTTGGTGGGGCTGGTTTTGAAGTGGACTGCTAGGGCTTTAGTCATATAACTTGCTGTAACAAGGTTTAACACAGGTTTTCTCCCGAatgaggattaaaaaaaattaatgaaacttcagtgttttattattatggaGGCTTATCCGATAAGCACTGCACAGCATGAGAATTTCTATAgcagtacagagagagaaatcagtCCCTGTAATTGCTGTCTGCGATTCCAGTTCCTCCCAGTGGTGCTCTCTTTACATGATGGAGGTGGGGACTCTGATTAGGGTGATTCATGTTTATAAGGCCGAGTGGTCCACTCATTGTAAAGCTGagagatgtaaataataataataataataatataaaaaatgtatcacaGGCCTAATGACATTGTATCacagagtaacacacacacagtgcagggtGCAGATTCAGTGCACTTGATCAGCCAACAGAGTGAAATCGCAGACAATCACAAGAGAGAGTTTAGACGTCCGTAAGTCACACGTTCCAGCACAGCAGGGACCCCTCTGATAAAGGAAGCGCTCCTGGATTGCTCATGGCTCTGCTTCCACCCCCCACAGCAGCTCATTCTCAATAACAGACGAGTGAATCTGTGCCGCACTTTCTTTCAGTTCACAAGTGTGCAGCTCGAAGGGAAGGTCTGTCCACTTCTCGCATCCGAAGCTTGCCAGCCCTCTCTGCTAGCGCTGGCATTCCCCAACGTATTGCAGTTCACCCCCGATCCCCAAGCACCAAGCTGCACACACGGCTCAAATGTAGCTATGGGCCTGTGTGGGAAATATTATTCATGGCAAAATGTGTCTACCTGCTGCTTCTTCACTGAAGAACGACTGGATTGCCAAATAGCTCCTGGAAATGAACCACGGCTTTGGTTAGAATTCAAATCATGTCCCGTTTgtttcattaatgtttttttttctttgtaattattattattgttattaatttattttgtacttctaAAACAAGTTGTGAAGTATTGGGCTTCAAACAGTGACAGATGGTCAGACATTGTGTGCACACtttctcttttgtgtgtgtgtgtgtgtgtgtgtatatat
>TU172996
CAGCAACTACTGCTCGTACTGCTACCGAGAGGAGCTCAGACGAAGGGAAGCGGAGCCGGCCGTACACAGGTTCTGAAGCCACGCCcacatctccctctctctctctctctctctctcacacccgTTCTCGACTAGGGAGGTATTTATACAAGCCCTCGCCACTGCCCTGCCCTCTTTCCAGATCCAGTACTGACAAACCAGAAAGAGAattgcccctctctctccatgccTGTTACTGGAAATGCAATAAGAATCGAAAAGCGATAGTAATAATCCAATTCATTCTATTAAGACTCATTAATGTCTTATCAATCAGGCCATGAGGGACACATGGAGAGGGGGTTTCCCGGTGAATTATGGAAGATGGGAAAGGAGgtcattttgtttggtttttttgtccattttatttctctgttctAAGTCCACCTAGTTTCAAGTGGTTTCATGTTTGCTTGCTGATTTTCTTGCGCAGGTTTGTTTAAGTCAAACCCCTCCAGACCTTCATCACTCCTGTTCTCCAGCCCCTGGTGCCGTTTTCAGGGGTCGGGTGTGAACTGCCATATGTTCTTTGTATATCCACAGCCCTActgcttttaaataacaaaGTGTCTATCATTTCTTATCAACAAGCCCAGCTGGTCTCTTGAAAAGCCCCCTGTCCCAGAGCACCACCCAGTGGAGAGCATTTGTATGTGCAAGTAATACTCACAGAGCAGTATCTAATAGTCTtgcgcaaaaaaaaaaagttaacgaCCCCACGATGCACGAAAAGCTACCAAGAAACAGGTAGAAACGGCTCGGAAAATGAAAGCAGGCGAGATATTCCTGTTTGAGTAATGTCCTCAGATATTGGTGAACTTCATTTGTCAAGAGGGAACCTACTCCAGGCCTAATAATAGACACAAAACTATGAAAAATCTGCGTATTTTGTAACGGGGAAACCTTCGAATGGCACCCTGTGGTACAGAGAGTGCAATGCGTCTGGACTACTATGCAATCCCTAAGCCTCCTGGGGCGAGAGAGACCTCTTTGCCTTCTAACATGCACCTGTTGAGGGCATTGTCCAGTGATCAGCAGCACAGTTCCAGTGGTGGTCCTGTTAGAGTTGATTGACATGTGATTGTGATTGAGCTGTCTCCGGTGGGGTTGGTGGGGCTGGTTTTGAAGTGGACTGCTAGGGCTTTAGTCATATAACTTGCTGTAACAAGGTTTAACACAGGTTTTCTCCCGAatgaggattaaaaaaaattaatgaaacttcagtgttttattattatggaGGCTTATCCGATAAGCACTGCACAGCATGAGAATTTCTATAgcagtacagagagagaaatcagtCCCTGTAATTGCTGTCTGCGATTCCAGTTCCTCCCAGTGGTGCTCTCTTTACATGATGGAGGTGGGGACTCTGATTAGGGTGATTCATGTTTATAAGGCCGAGTGGTCCACTCATTGTAAAGCTGagagatgtaaataataataataataataatataaaaaatgtatcacaGGCCTAATGACATTGTATCacagagtaacacacacacagtgcagggtGCAGATTCAGTGCACTTGATCAGCCAACAGAGTGAAATCGCAGACAATCACAAGAGAGAGTTTAGACGTCCGTAAGTCACACGTTCCAGCACAGCAGGGACCCCTCTGATAAAGGAAGCGCTCCTGGATTGCTCATGGCTCTGCTTCCACCCCCCACAGCAGCTCATTCTCAATAACAGACGAGTGAATCTGTGCCGCACTTTCTTTCAGTTCACAAGTGTGCAGCTCGAAGGGAAGGTCTGTCCACTTCTCGCATCCGAAGCTTGCCAGCCCTCTCTGCTAGCGCTGGCATTCCCCAACGTATTGCAGTTCACCCCCGATCCCCAAGCACCAAGCTGCACACACGGCTCAAATGTAGCTATGGGCCTGTGTGGGAAATATTATTCATGGCAAAATGTGTCTACCTGCTGCTTCTTCACTGAAGAACGACTGGATTGCCAAATAGCTCCTGGAAATGAACCACGGCTTTGGTTAGAATTCAAATCATGTCCCGTTTgtttcattaatgtttttttttctttgtaattattattattgttattaatttattttgtacttctaAAACAAGTTGTGAAGTATTGGGCTTCAAACAGTGACAGATGGTCAGACATTGTGTGCACACtttctcttttgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatataatttcaagaaTGTGTACATACCCGATtctcttgttttaaatgttgctttgCCTTCTTAACACACTTTTCAGAGAACAAATAACCAAGGAGAGAGTCAGCTCCTTTATACTCTTCCCAGTTTGGTTAATGATGTGCTGTTTCCATGTATTGACTGCATACGTCAACATTATTGCATATTGACATTGGTTAGATTGGTCCAAATACCAGTATATTCCACAGCTGTTTCCAagttgtacatatatatatatttttttttgatGTCTTATTTAATGATGAAGGGGGAAGAAATAAATCCATTA

Function

symbol description
otud7b Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and thiol-dependent deubiquitinase. Acts upstream of or within Notch signaling pathway. Predicted to be active in cytoplasm and nucleus. Orthologous to human OTUD7B (OTU deubiquitinase 7B).

NR:

description
PREDICTED: OTU domain-containing protein 7B isoform X1

GO: NA

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012539 True 4973 mRNA 0.56 11 20992490 21004190
TU172996 False 2539 lncRNA 0.43 2 21001968 21039749

Neighbor

gene id symbol gene type direction distance location
AMCG00012533 rbm8a coding upstream 35567 20951848 ~ 20956923 (+)
AMCG00012529 lix1l,LOC106588578,LOC106570188 coding upstream 42036 20940980 ~ 20950454 (+)
AMCG00012535 lix1l,LOC106570188,LOC106588578 coding upstream 62106 20924466 ~ 20930384 (+)
AMCG00012531 NA coding upstream 70582 20919707 ~ 20921908 (+)
AMCG00012534 NA coding upstream 75859 20906056 ~ 20916631 (+)
AMCG00012538 sf3b4 coding downstream 4500 21044249 ~ 21050805 (+)
AMCG00012544 sv2a,LOC107592174 coding downstream 65370 21105119 ~ 21109248 (+)
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding downstream 69789 21109538 ~ 21112947 (+)
AMCG00012542 nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836 coding downstream 108489 21148238 ~ 21166777 (+)
AMCG00012549 NA coding downstream 260315 21300064 ~ 21307188 (+)
G137539 NA non-coding upstream 235226 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 458531 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 663666 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 754617 20170426 ~ 20237873 (+)
G137332 NA non-coding upstream 764454 20165283 ~ 20228036 (+)
G137634 NA non-coding downstream 180450 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 192231 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 268469 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 562250 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 740317 21780066 ~ 21786045 (+)
AMCG00012523 NA other upstream 498703 20481114 ~ 20493787 (+)
AMCG00012521 NA other upstream 547203 20430925 ~ 20445287 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 569934 20401009 ~ 20422556 (+)
AMCG00012516 NA other upstream 647844 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 721571 20246651 ~ 20270919 (+)
G137583 NA other downstream 16946 21056695 ~ 21059263 (+)
G137633 NA other downstream 173848 21213597 ~ 21219163 (+)
G137636 NA other downstream 184992 21224741 ~ 21230836 (+)
AMCG00012546 NA other downstream 205914 21245663 ~ 21253003 (+)
G137629 NA other downstream 230611 21270360 ~ 21332070 (+)

Expression


Co-expression Network