AMCG00012541


Basic Information

Item Value
gene id AMCG00012541
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21040089 ~ 21042443 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012541
GTTTGCCCAAAACGACGCCCACTGGATTGACGTTGTGAAGAAGTGACTTTTGTCTAGACTAGACGGGACGGGTGTAGCAGGAGTCGGGCGGTAAATCATCAGTTGCAATTCCCTCGCATGGGACAGTTGCGTTCTTACATTTCTCCACGGACTACACAGCGTTTGAAAAGGGGATGTAGGTGTGAATGGGGGGCTGTCCGCCGGTTTCAGTTTCTGTATAAAACGTGTTGCTCCCCTCGCATTGAAGGATGTGCGCCCAGCCTCTCTCCACTCTAGCAGACCTGTGCGTCAGGTGAACACCATGGACCTTCTCTCTAGGACCCTCTCTGAGCTGCACCTCAACTGCCTTGATGGAGTGATGCACACCAACTCCGTAAAGAGGTCTGAGCGCAAGGCCCGGCTGCAGCGGGGCAGCTCGTCCTGGGACAGCAGCGACCCGCACTGCCAATACTGCATCAGCTACGGCAAGCGACTCAAGCGCCTGTCCTGCGGCCACACGTATTGCGGCGCCTGCGCAGACCGCATCGTCAACGAGGCCTTCCAGGACATCGAGGGGCTGTCGGAGTTCCCCTGCCCCATGTGCAAATCCATCCAGCGCCTGGGGTCCATCAACTACGGCGCAATGTGACCCCTAGCCGCTCCTCTAGACAGCCCGTCCAGGCGCCTCACCCAAGCGACTTGACGCCTTTCCATCCACCGGGGCGGATTCGCTCCCCGGACCATGCATGGGATCTTTATGAGGACAGGGGTCCTCAAACACAGGACGCGCAAAAACGACACAAAATACAGCgggatttgtatatattttttatcaacaCGTATTTTGTGCAGACTTCCAACAGGTGAGTTTGAAGACTGGCGTTATTCGACTTCCTAAAATAGGATTTTAAAGTGACTTCTACAAATGCTGCGCAGTTTGAAGGTGATGCTCCGCTTTCCAAACTCCAAACTGTGTCTATTACCAAACAATGAATGCACCACAGTTATCTCAGGGCTACGCGTTTTAACTGATTGTATTATTGCTTTGCTAATTTGTAACCATAAGTGTTCATCAGTCAATGCCAAGAGTTTCTTGGAAAACTGTTGTCACTGCAGTCGCTGCGTAAAAGGAGAGCATCTGAAGAAACGGTCAACTAATTAAACCCAGCAGCTCGTCCAGTTAAATGGTTCAGGATTTGTACAAAACACACTCAGATACTTGGTGAAGACAGTCTCAGGTCTTTactctgtaaatatatttccttcaaaagatatttgtgtatatatacgttttaatttattttttaacttccCACCTTCCAATTATACTTCTGTTTATATTGGCCGAGACAATTATGCAGCATTATAGAACCAGTGAAGTGAtgatgttgaaataaaatattaaaaaacaaacaaacaa
>TU173044
GTTTGCCCAAAACGACGCCCACTGGATTGACGTTGTGAAGAAGTGACTTTTGTCTAGACTAGACGGGACGGGTGTAGCAGGAGTCGGGCGGTAAATCATCAGTTGCAATTCCCTCGCATGGGACAGTTGCGTTCTTACATTTCTCCACGGACTACACAGCGTTTGAAAAGGGGATGTAGGTGTGAATGGGGGGCTGTCCGCCGGTTTCAGTTTCTGTATAAAACGTGTTGCTCCCCTCGCATTGAAGGATGTGCGCCCAGCCTCTCTCCACTCTAGCAGACCTGTGCGTCAGGTGAACACCATGGACCTTCTCTCTAGGACCCTCTCTGAGCTGCACCTCAACTGCCTTGATGGAGTGATGCACACCAACTCCGTAAAGAGGTCTGAGCGCAAGGCCCGGCTGCAGCGGGGCAGCTCGTCCTGGGACAGCAGCGACCCGCACTGCCAATACTGCATCAGCTACGGCAAGCGACTCAAGCGCCTGTCCTGCGGCCACACGTATTGCGGCGCCTGCGCAGACCGCATCGTCAACGAGGCCTTCCAGGACATCGAGGGGCTGTCGGAGTTCCCCTGCCCCATGTGCAAATCCATCCAGCGCCTGGGGTCCATCAACTACGGCGCAATGTGACCCCTAGCCGCTCCTCTAGACAGCCCGTCCAGGCGCCTCACCCAAGCGACTTGACGCCTTTCCATCCACCGGGGCGGATTCGCTCCCCGGACCATGCATGGGATCTTTATGAGGACAGGGGTCCTCAAACACAGGACGCGCAAAAACGACACAAAATACAGCgggatttgtatatattttttatcaacaCGTATTTTGTGCAGACTTCCAACAGGTGAGTTTGAAGACTGGCGTTATTCGACTTCCTAAAATAGGATTTTAAAGTGACTTCTACAAATGCTGCGCAGTTTGAAGGTGATGCTCCGCTTTCCAAACTCCAAACTGTGTCTATTACCAAACAATGAATGCACCACAGTTATCTCAGGGCTACGCGTTTTAACTGATTGTATTATTGCTTTGCTAATTTGTAACCATAAGTGTTCATCAGTCAATGCCAAGAGTTTCTTGGAAAACTGTTGTCACTGCAGTCGCTGCGTAAAAGGAGAGCATCTGAAGAAACGGTCAACTAATTAAACCCAGCAGCTCGTCCAGTTAAATGGTTCAGGATTTGTACAAAACACACTCAGATACTTGGTGAAGACAGTCTCAGGTCTTTactctgtaaatatatttccttcaaaagatatttgtgtatatatacgttttaatttattttttaacttccCACCTTCCAATTATACTTCTGTTTATATTGGCCGAGACAATTATGCAGCATTATAGAACCAGTGAAGTGAtgatgttgaaataaaatattaaaaaacaaacaaacaaaaaacgtctGTGTATTGTGTATACTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012541 False 1399 mRNA 0.48 2 21040118 21042443
TU173044 True 1428 TUCP 0.48 2 21040089 21042443

Neighbor

gene id symbol gene type direction distance location
AMCG00012537 NA coding downstream 134328 20901724 ~ 20905761 (-)
AMCG00012527 NA coding downstream 177471 20859265 ~ 20862618 (-)
AMCG00012528 NA coding downstream 180886 20858725 ~ 20859203 (-)
AMCG00012526 NA coding downstream 205597 20832941 ~ 20834492 (-)
AMCG00012524 NA coding downstream 297091 20703429 ~ 20742998 (-)
AMCG00012545 NA coding upstream 77673 21120116 ~ 21121378 (-)
AMCG00012548 NA coding upstream 145734 21188177 ~ 21212016 (-)
AMCG00012547 NA coding upstream 182298 21224741 ~ 21230841 (-)
AMCG00012552 NA coding upstream 227297 21269740 ~ 21274408 (-)
AMCG00012551 NA coding upstream 240858 21283301 ~ 21290412 (-)
G137601 NA non-coding downstream 322 21034530 ~ 21039767 (-)
G137591 NA non-coding downstream 83711 20951938 ~ 20956378 (-)
G137559 NA non-coding downstream 123807 20832999 ~ 20916282 (-)
G137558 NA non-coding downstream 210722 20819325 ~ 20829367 (-)
G137517 NA non-coding downstream 462246 20569818 ~ 20577843 (-)
G137619 NA non-coding upstream 54479 21096922 ~ 21097296 (-)
G137628 LOC100380645,LOC107688237,LOC108256176,LOC106605293,LOC108433883,LOC107592459 non-coding upstream 124015 21166458 ~ 21169358 (-)
G137699 NA non-coding upstream 261029 21303472 ~ 21306761 (-)
G137701 NA non-coding upstream 265775 21308218 ~ 21315238 (-)
G137711 NA non-coding upstream 321849 21364292 ~ 21364924 (-)
G137608 NA other downstream 1658 21035163 ~ 21038431 (-)
G137408 NA other downstream 769225 20261002 ~ 20270864 (-)
AMCG00012503 NA other downstream 1129711 19903106 ~ 19910378 (-)
G137246 NA other downstream 1246558 19714162 ~ 19793531 (-)
G137199 NA other downstream 1532695 19441927 ~ 19507394 (-)
AMCG00012559 NA other upstream 391221 21433664 ~ 21635426 (-)
AMCG00012556 NA other upstream 451784 21494227 ~ 21502199 (-)
AMCG00012564 NA other upstream 1035730 22078173 ~ 22088469 (-)
AMCG00012566 NA other upstream 1061210 22103653 ~ 22120556 (-)
G137974 LOC107575789 other upstream 1879440 22921883 ~ 23049378 (-)

Expression


Co-expression Network