AMCG00012543 (sv2a,LOC107592458,LOC107726650,LOC107671386)


Basic Information

Item Value
gene id AMCG00012543
gene name sv2a,LOC107592458,LOC107726650,LOC107671386
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21109538 ~ 21112947 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012543
ATGATCAAGTACATGCAGAAGCAGGAGTACGCCCTGCGCACCAAGGTGTTCATCAAGGAGCGCGTGGAGCACGTCACTTTCAACTTCACCCTGGAGAACCAGATCCACCGCAACGGAGAGTACTTCAATGACAAGTTCATCAGCCTCAAGATGAAGTCTATGGTGTTTGAGGATTCTGTGTTTGAGGAGTGCTACTTCGAAGATATCACCTCCAGCAACACGTTCTTCAGAAACTGTACCTTCATCTCCACTCTCTTCTACAACACGGaCCTGTTCAAGTACCGCTTTGAGAACAGTCGTCTGGTGAACAGCACCTTCCTGCACAACAAGGAGGGCTGCATGCTGGATTTCAGCGACGACAACAATGCCTACATGATCTATTTTGTCAGCTTCCTGGGCACCTTGGCCGTGCTGCCCGGCAACATCGTCTCTGCCCTGCTAATGGACAAGATCGGCCGCCTGCGCATGCTGGctgGCTCCAGTGTGATGTCGTGCGTGAGCTGTTTCTTCCTGTCTTTCGGCAGTAACGAGTCTGCCATGATCGCGCTACTCTGTCTGTTCGGGGGCATCAGCATCGCCTCCTGGAATGCCCTGGACGTGCTCACAGTGGAGCTCTACCCCTCCGACAAACGGACCACGGCATTCGGCTTCCTCAATGCCCTCTGTAAGCTGGCGGCCGTGTTGGGCATCTCCATCTTCACCTCCTTCGTGGGCATCACCAAAGCGGTGCCCATCATGTTTGCGTCGGGCGCCTTGGCAGCCGGCTCCTTCCTGGCGCTCAAGTTGCCCGAGACCAGGGGGCAGGTGCTTCAGTAA

Function

symbol description
sv2a Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within chemical synaptic transmission; neurotransmitter transport; and transmembrane transport. Predicted to be located in cytoplasmic vesicle; membrane; and synapse. Predicted to be integral component of membrane. Orthologous to human SV2A (synaptic vesicle glycoprotein 2A).

NR:

description
synaptic vesicle glycoprotein 2A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012543 True 816 mRNA 0.55 5 21109538 21112947

Neighbor

gene id symbol gene type direction distance location
AMCG00012544 sv2a,LOC107592174 coding upstream 290 21105119 ~ 21109248 (+)
AMCG00012538 sf3b4 coding upstream 58733 21044249 ~ 21050805 (+)
AMCG00012540 NA coding upstream 71109 21013421 ~ 21038429 (+)
AMCG00012533 rbm8a coding upstream 152615 20951848 ~ 20956923 (+)
AMCG00012529 lix1l,LOC106588578,LOC106570188 coding upstream 159084 20940980 ~ 20950454 (+)
AMCG00012542 nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836 coding downstream 35291 21148238 ~ 21166777 (+)
AMCG00012549 NA coding downstream 187117 21300064 ~ 21307188 (+)
AMCG00012550 NA coding downstream 202088 21315035 ~ 21317648 (+)
AMCG00012553 NA coding downstream 321498 21434445 ~ 21436426 (+)
AMCG00012555 NA coding downstream 325536 21438483 ~ 21443188 (+)
G137539 NA non-coding upstream 352274 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 575579 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 780714 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 871665 20170426 ~ 20237873 (+)
G137634 NA non-coding downstream 107252 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 119033 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 195271 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 489052 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 667119 21780066 ~ 21786045 (+)
G137583 NA other upstream 50275 21056695 ~ 21059263 (+)
AMCG00012539 otud7b,LOC106581836 other upstream 69789 20992490 ~ 21039749 (+)
AMCG00012523 NA other upstream 615751 20481114 ~ 20493787 (+)
AMCG00012521 NA other upstream 664251 20430925 ~ 20445287 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 686982 20401009 ~ 20422556 (+)
G137633 NA other downstream 100650 21213597 ~ 21219163 (+)
G137636 NA other downstream 111794 21224741 ~ 21230836 (+)
AMCG00012546 NA other downstream 132716 21245663 ~ 21253003 (+)
G137629 NA other downstream 157413 21270360 ~ 21332070 (+)
G137644 NA other downstream 190278 21303225 ~ 21316451 (+)

Expression


Co-expression Network