AMCG00012544 (sv2a,LOC107592174)


Basic Information

Item Value
gene id AMCG00012544
gene name sv2a,LOC107592174
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21105119 ~ 21109248 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012544
ATGGTGGGAGCTTTCCTGTGGGGTGGGCTGGCGGACCGCATCGGCCGGCGCCAGTGTCtgctcatctctctctccatcaacAGTGTCTTCGCCTTCTTCTCGTCCTTCGTGCAGGGCTACAGCACCTTCCTCCTCTGCCGCCTGCTCTCCGGGGTCGGtatTGGCGGCTCCATCCCCATCGTGTTCTCCTATTACTCGGAGTTCCTGGCTCAGGAGAAGAGAGGGGAGCATCTGAGCTGGCTGTGCATGTTCTGGATGATCGGGGGGATCTACGCCTCGGCCATGGCTTGGGCCATCATCCCACACTATGGCTGGAGTTTCCAGATGGGCTCAGCGTACCAGTTCCACAGCTGGCGTGTGTTTGTGCTAAATGGCAAGCACGACGAGGCCTGGATGATCCTGAAACAAGTGCACGACACCAACATGAGGGCCAAGGGCTACCCCGAGAGAGTCTTCTCTGTCACTACCATCAAGACGGTGAAGCAGCTGGATGAGCTGGTGGAGATTGGGGCGGACACCCAGGCCTGGCACCGGCGCTGGAGGATGCGTCTGACCAGTCTATTCCACCAGGTCTGGGACAATTTCTTGGCCTGTTTCGCCCCAGAGTTTCGCAGAACCACTTTAATGATGATGGCTGTGTGGTTCACAATGTCTTTCAGGTAA

Function

symbol description
sv2a Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within chemical synaptic transmission; neurotransmitter transport; and transmembrane transport. Predicted to be located in cytoplasmic vesicle; membrane; and synapse. Predicted to be integral component of membrane. Orthologous to human SV2A (synaptic vesicle glycoprotein 2A).

NR:

description
synaptic vesicle glycoprotein 2A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012544 True 663 mRNA 0.58 6 21105119 21109248

Neighbor

gene id symbol gene type direction distance location
AMCG00012538 sf3b4 coding upstream 54314 21044249 ~ 21050805 (+)
AMCG00012540 NA coding upstream 66690 21013421 ~ 21038429 (+)
AMCG00012533 rbm8a coding upstream 148196 20951848 ~ 20956923 (+)
AMCG00012529 lix1l,LOC106588578,LOC106570188 coding upstream 154665 20940980 ~ 20950454 (+)
AMCG00012535 lix1l,LOC106570188,LOC106588578 coding upstream 174735 20924466 ~ 20930384 (+)
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding downstream 290 21109538 ~ 21112947 (+)
AMCG00012542 nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836 coding downstream 38990 21148238 ~ 21166777 (+)
AMCG00012549 NA coding downstream 190816 21300064 ~ 21307188 (+)
AMCG00012550 NA coding downstream 205787 21315035 ~ 21317648 (+)
AMCG00012553 NA coding downstream 325197 21434445 ~ 21436426 (+)
G137539 NA non-coding upstream 347855 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 571160 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 776295 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 867246 20170426 ~ 20237873 (+)
G137634 NA non-coding downstream 110951 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 122732 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 198970 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 492751 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 670818 21780066 ~ 21786045 (+)
G137583 NA other upstream 45856 21056695 ~ 21059263 (+)
AMCG00012539 otud7b,LOC106581836 other upstream 65370 20992490 ~ 21039749 (+)
AMCG00012523 NA other upstream 611332 20481114 ~ 20493787 (+)
AMCG00012521 NA other upstream 659832 20430925 ~ 20445287 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 682563 20401009 ~ 20422556 (+)
G137633 NA other downstream 104349 21213597 ~ 21219163 (+)
G137636 NA other downstream 115493 21224741 ~ 21230836 (+)
AMCG00012546 NA other downstream 136415 21245663 ~ 21253003 (+)
G137629 NA other downstream 161112 21270360 ~ 21332070 (+)
G137644 NA other downstream 193977 21303225 ~ 21316451 (+)

Expression


Co-expression Network