AMCG00012546


Basic Information

Item Value
gene id AMCG00012546
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21245663 ~ 21253003 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012546
ATGCAGGGGGCTCAATCATATTTTAATCTCTACTTGCGTTGTGTATAATTAAATTTGTATGCAATTGCACTTTTTTCCCCAGCTGTATGCCCAGACGTCACCTGTCCAGGGGAATTGACAGCTTGTTATTAATATAGTTAGTGTTCATTGTTAGAGTGTTTttgaaattacaatattttttacggtcattattaaattacttaatttaattaattgatcatttttaactttattgtACATATTTACCAGTACCTTACCTAAATTAgcataacaatacatttgtaaatagatGAAACTCAGactcagatgtgtgtgtgagcatgtgcacgtgtgtgtgtgtgtctgtgtattggAGGACAACTGATTTGTTGCCTCCCATGTGAGCAATGTGAATGTTGACGTGAGCCGAGTTCAGCAACTGGATAATCAAAATTTCGAAGacaagattgtgtgtgtgtgtgtgttggggggggcgGGATTTGGTGATAATTACATTAGGGGAAAATAGCTTCTCATTCTCACTTTCTTTCTCTAGTTCGGTTAATTCACTTTGGCATATGTAAAGCTGATTTTCTCAGCCCAGGAGTTCTGCGTGGCCATCTCTGTGTCGGTCTTTGGGTGCAAAGCTGTGTGCATTGCCAGCAGTGAGCCTGTGATTGTCATCCAGTGTGGGGCCAACCCTCAGCCAGCAACACAGCCCAGCAGTGCCCCGGTCTACCAACTGGCACCGGACACAGAGCAGGATGCTTTTCCAAAGACCCCCCCTCTGCAGTAtacagagtgacagagagagccGGCTGGACCTgcacagggggagagaggggaacacCGAGTCACCTGCACAGCCACCGCAGGGGGAGTCGGGTTTTCTAGATGAAGAGCCttttattaagaaataaacaaaatttaCCTATGCTGACAGGTTCCTCTGACAGAATTCCaggttttacccagtcccctGATTGTACTTTGGGAAACCTGTCCtagctgtgaaaatgtattaagGTGCTAGTTGCAATTTGTCGGATACTTGTGCTGCTGCAGGCGGTGAGGATTCTGCAAACCTGAGGAAATCTGCACAACACGAACATGACCACTGTGACTCTCCTACAGGAGAGGGAGGCCTGACTGCTTCCCATGAGGCACAGCGTCCATCAGAGCTGAGGATTGTGCTGCTGGGGGGGAGTGGACTGGATGGGAAGAGTTCATCAGGAAACACCATCCTGGGCAGAGAGGAGTTTACGACTGGGAGACTGACTAAGCAGTGAGAGAGGAGACAGGGTGAAGTGACTGGGAGGCAGGTCACTTTGGTCGCCACACCAGGCTGGTGGAGTGGTTCTGTACAGGAGACTCCAGAGCGGCTTAAACAGGAGAGATTGTGcgcagtgtgtctctgtgcccccCGGGACCCCACACTCTCCTCCTAGCCATAGACACACTATAGTGCTGTTCATCGGGGGGATGGACTGAGAGACACAACCATTGAGCAGCACATTGAGAGAGGAGGGAAGAGACTTGTGGCTTGTGGAGAAATGTGGGAACAGGTATCATGTTCTCAATAACAGCCACTGGAGCGATGGCATTCAGGTCACAGAGCTGCTGAAGAAGATAGAGAAGATGGTAGCAGAGAACAGGGGGATGTGTTTGTTAGTAAGAATAGTctgcaggagctggagaggagagagactaTTGGAGGAGCTGAAACAGAGTTGTTAGGAGAGTCAGAGACGGAGGAAAgaggagctgaaggagaagaTGAGAAAGACTATGGAGTTAGAGGAGCTGGGGGAGGAGACGGAAGAATCCACATGGCCTGTGAGGAGGAGGAACAGCATTCAACAACCTTCTGACAtGAGTGGAGGAGCGGCTGCAGAGGGAAGCCCAGAGAGACCAGACTCTTCTGACTCCAGCAGTGCAGAGAAGAGAGATGATCGGTGGCAGATCTGGAGCAGAGTAAGATGAGAACAGGACTCATGGCTCTGAGATTGGTAGTCTGTCAGTCACAGGGAACCTCTCTGAACTCCTGGGGCTGGGCGCATAAAACATCTGCAGCGTTGAACtgaatcttttcattttcactgagATGCAATACATCTTACCCAAACCCCTAAGCAGTGATGTACATGCGGGGGAAGTCTGGGGGGAGGCACGAATGGCAGCCCTGGGCGCTGGAGACCGACTGTACACCACTGCTACCCAGTCAGTGCTGGTGGAGACCCTGCTGGTGAGCCCCTGAAAAGAGACTGTCCAGACTGCTGCAGTCAAACCCAGCTGTTAACCCTTTGGCACTTTTAAAGATAGGACTAGGTTTCTTTTCAGTTGGTTGGCTGCCACTGCCACTGTGACTCAACTGAAAATCCCATCGAGGTTCCGGTACATTTTGTGATCTTTCAATCTGATTTGGGTAAGAGTTCTGTCGGTCAAGATTTTTTAGCAATCCCATGGAAACAGCCTCATCTGGACAGCCTGCCTGGAGTTTTGTCTTGTAATGTTCTTGGCTCATATCTCAGtttgtcaatttattttatttctatgaaaaatatatttttaaagaattgagttgtttgtggtttttcaattgtttttgtgtgtgttgtccaataaaaacaataagataATTTAAA
>TU173094
CGATAATCTTCAACTACAGTTCATTTATAGGTGtaagTTCGGTTAATTCACTTTGGCATATGTAAAGCTGATTTTCTCAGCCCAGGAGTTCTGCGTGGCCATCTCTGTGTCGGTCTTTGGGTGCAAAGCTGTGTGCATTGCCAGCAGTGAGCCTGTGATTGTCATCCAGTGTGGGGCCAACCCTCAGCCAGCAACACAGCCCAGCAGTGCCCCGGTCTACCAACTGGCACCGGACACAGAGCAGGATGCTTTTCCAAAGACCCCCCCTCTGCAGTAtacagagtgacagagagagccGGCTGGACCTgcacagggggagagaggggaacacCGAGTCACCTGCACAGCCACCGCAGGGGGAGTCGGGTTTTCTAGATGAAGAGCCttttattaagaaataaacaaaatttaCCTATGCTGACAGGTTCCTCTGACAGAATTCCaggttttacccagtcccctGATTGTACTTTGGGAAACCTGTCCtagctgtgaaaatgtattaagGTGCTAGTTGCAATTTGTCGGATACTTGTGCTGCTGCAGGCGGTGAGGATTCTGCAAACCTGAGGAAATCTGCACAACACGAACATGACCACTGTGACTCTCCTACAGGAGAGGGAGGCCTGACTGCTTCCCATGAGGCACAGCGTCCATCAGAGCTGAGGATTGTGCTGCTGGGGGGGAGTGGACTGGATGGGAAGAGTTCATCAGGAAACACCATCCTGGGCAGAGAGGAGTTTACGACTGGGAGACTGACTAAGCAGTGAGAGAGGAGACAGGGTGAAGTGACTGGGAGGCAGGTCACTTTGGTCGCCACACCAGGCTGGTGGAGTGGTTCTGTACAGGAGACTCCAGAGCGGCTTAAACAGGAGAGATTGTGcgcagtgtgtctctgtgcccccCGGGACCCCACACTCTCCTCCTAGCCATAGACACACTATAGTGCTGTTCATCGGGGGGATGGACTGAGAGACACAACCATTGAGCAGCACATTGAGAGAGGAGGGAAGAGACTTGTGGCTTGTGGAGAAATGTGGGAACAGGTATCATGTTCTCAATAACAGCCACTGGAGCGATGGCATTCAGGTCACAGAGCTGCTGAAGAAGATAGAGAAGATGGTAGCAGAGAACAGGGGGATGTGTTTGTTAGTAAGAATAGTctgcaggagctggagaggagagagactaTTGGAGGAGCTGAAACAGAGTTGTTAGGAGAGTCAGAGACGGAGGAAAgaggagctgaaggagaagaTGAGAAAGACTATGGAGTTAGAGGAGCTGGGGGAGGAGACGGAAGAATCCACATGGCCTGTGAGGAGGAGGAACAGCATTCAACAACCTTCTGACAtGAGTGGAGGAGCGGCTGCAGAGGGAAGCCCAGAGAGACCAGACTCTTCTGACTCCAGCAGTGCAGAGAAGAGAGATGATCGGTGGCAGATCTGGAGCAGAGTAAGATGAGAACAGGACTCATGGCTCTGAGATTGGTAGTCTGTCAGTCACAGGGAACCTCTCTGAACTCCTGGGGCTGGGCGCATAAAACATCTGCAGCGTTGAACtgaatcttttcattttcactgagATGCAATACATCTTACCCAAACCCCTAAGCAGTGATGTACATGCGGGGGAAGTCTGGGGGGAGGCACGAATGGCAGCCCTGGGCGCTGGAGACCGACTGTACACCACTGCTACCCAGTCAGTGCTGGTGGAGACCCTGCTGGTGAGCCCCTGAAAAGAGACTGTCCAGACTGCTGCAGTCAAACCCAGCTGTTAACCCTTTGGCACTTTTAAAGATAGGACTAGGTTTCTTTTCAGTTGGTTGGCTGCCACTGCCACTGTGACTCAACTGAAAATCCCATCGAGGTTCCGGTACATTTTGTGATCTTTCAATCTGATTTGGGTAAGAGTTCTGTCGGTCAAGATTTTTTAGCAATCCCATGGAAACAGCCTCATCTGGACAGCCTGCCTGGAGTTTTGTCTTGTAATGTTCTTGGCTCATATCTCAGtttgtcaatttattttatttctatgaaaaatatatttttaaagaattgagttgtttgtggtttttcaattgtttttgtgtgtgttgtccaataaaaacaataagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012546 True 2624 mRNA 0.47 6 21245907 21253003
TU173094 False 2118 lncRNA 0.50 7 21245663 21252995

Neighbor

gene id symbol gene type direction distance location
AMCG00012542 nr2f5,LOC108433883,LOC107592459,LOC107726692,LOC105005680,LOC107592141,LOC103038004,LOC107671473,LOC100380645,LOC105891836 coding upstream 78886 21148238 ~ 21166777 (+)
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding upstream 132716 21109538 ~ 21112947 (+)
AMCG00012544 sv2a,LOC107592174 coding upstream 136415 21105119 ~ 21109248 (+)
AMCG00012538 sf3b4 coding upstream 194858 21044249 ~ 21050805 (+)
AMCG00012540 NA coding upstream 207234 21013421 ~ 21038429 (+)
AMCG00012549 NA coding downstream 47061 21300064 ~ 21307188 (+)
AMCG00012550 NA coding downstream 62032 21315035 ~ 21317648 (+)
AMCG00012553 NA coding downstream 181442 21434445 ~ 21436426 (+)
AMCG00012555 NA coding downstream 185480 21438483 ~ 21443188 (+)
AMCG00012557 NA coding downstream 237846 21490849 ~ 21491478 (+)
G137634 NA non-coding upstream 24619 21220199 ~ 21221044 (+)
G137539 NA non-coding upstream 488399 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 711704 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 916839 20321606 ~ 20328824 (+)
G137348 NA non-coding upstream 1043859 20201551 ~ 20201804 (+)
G137645 NA non-coding downstream 55215 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 348996 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 527063 21780066 ~ 21786045 (+)
G137754 NA non-coding downstream 545500 21798503 ~ 21813863 (+)
G137761 NA non-coding downstream 583239 21836242 ~ 21958354 (+)
G137636 NA other upstream 14827 21224741 ~ 21230836 (+)
G137633 NA other upstream 26500 21213597 ~ 21219163 (+)
G137583 NA other upstream 186400 21056695 ~ 21059263 (+)
AMCG00012539 otud7b,LOC106581836 other upstream 205914 20992490 ~ 21039749 (+)
AMCG00012523 NA other upstream 751876 20481114 ~ 20493787 (+)
G137629 NA other downstream 17357 21270360 ~ 21332070 (+)
G137644 NA other downstream 50222 21303225 ~ 21316451 (+)
G137764 NA other downstream 601703 21854706 ~ 21876542 (+)
G137775 NA other downstream 679292 21932295 ~ 21958158 (+)
G137899 NA other downstream 1312421 22565424 ~ 22566106 (+)

Expression


Co-expression Network