AMCG00012552


Basic Information

Item Value
gene id AMCG00012552
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21269740 ~ 21274408 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012552
CGGAGGGTCGGGAGCGAGTCTGACACGGACACAGGGCTGCGCAACCAGAGCAGAGACGACACAGATACAGGATACTTGGTGACACATTTTCCCCAAGCCACAAGGGCCTCTTTGCTGGCTCGGTCCACGGGGCTCGACCCCCGGTAAACCCCTGCATGGAGTAGGACCTGCGACCACCACTGCACGGTGGGTTGGATCGTCCGGGTGGTAAAGACAGAAACGAACGTTGACTTTCCCTGGAGCAGTTTTATTACGCATTGAAAACGTGGTTGTTGAAGCCCTGACCAGCTGTTGAAGATGTTAACCTCTGTTCCCACTAACGGGGGCGTGGTGATCGTCACACAGATGTGCCCACAGGGTCCGGGCGCTGTGCCCATTGGTGCTCAACAGTCAGGGCTGCCACAGGGCTTCACCTCCCCAAGGGATGCAGCTCTGAAGCGCTTTGTGAAAGGAGAGCCCACAGCCCTGGGGCAGGTGGTCCAGATCATGATCGGCCTTTTCTCTATCGGTTTAGGAGTGGTAACCCTGCAAGACAGGTTTATAGCAGATGTCATTGGGCTCCCATTTTGGACAGGGCTAATATATATTGTCTCTGGGGCTGTGAGTATTGCGggggagaagaggaagaaaaataacatctgtCTCaTGAAGGCAGCCATGTCCATGAATATTGTGAGTGCGGTGGCTGCAGGCATAGCGATACTTTTCGACTTGACTGAGGTTGTGGACATTTTACGCAGTTTGGCATGGGTAATGCTGTTTTCCTCGATCCTGGAGTTCTGCGTGGCCATCTCCGTGTCGGCCTTTGGGTGCAAAGCTGTGTGCAATGGCAGCCCTGCGCCTGTGATTGTCATACAGTATGGGGCTAACTCTCAGCCAGCAACACAGCCCAGCAATCCCCCGGGCTACCAGCTGGCACCGGACACAGAGCAGGACGCTTTTCCCAAGACCCCCCCTCCGCAGTAtacagagtgacagagagagccGGCTGGACCTgcacagggggagagaggggaacacCGAGTCACCTGCACAGCCACTGCAGGGGGAGTGAGGGTTTCTAGAGGAAGAGCCTTGgagtctgtgtgtgaatgtctgCAGGAGCTCTTCTGCCATCTTCAGAGCTGCCTTTCACACACGGCTGTTTACAACTCACCCTCGATGCTGTCAGAGTCCTGCTGCTTCCTCTCCGCTTCAGTGAGATAAGACAGACAGCTCCATCAATGTTgcaaatatatcacaatatatatcgtttatttaaaaaatgcttttcttttaaaccttcattaagaaataaaataaattagcctATGCTCAGactttcctctctctgtgtcttttgaGAAACACCACTTACCAGGGTAAGATGTCTCTTCTTGGATCTAGTAAAAACTGCACTTTAAAGTCGATGCAGAGTTTCAAATGGACTAGATGCACAGATGTCCTGAAAGTCCCCAGTCTGCTTTTGCACAATACACCACTCTAAAGGTGGTGAAATGGAGTGAAAAAGGGAAAACGGTTTTTTTTGGGCAGTAGAGGTATCCTTTTATGGTTGCTCCTTCTTGACAGAGTTACTAGTGTGTATGATTTAGGGCTACAACAACTAATtgataacataattaattaaaaatcattggCATTGAATTTCATTGTCAATTAGATGGGTCTAAGTGTGGCGCAGCTAAAAAAAATACTAGGGCTGTCAggcgattaaaaaaaatgattggtTGATCAATGGCCATTAGTTGTCTAAATCGGTAGATTAATtgggcacttattaaaataagtgtaatggttgtgctacacagtaatactttaataaatactaggcattgatattacagtagccTATAACAATTCCTAACGCAATGGTAAagaaatgaaatagaaaatgtatattattaaaatcaggGTGAGATTTTATCAACAATGTGTGGCG

Function

GO: NA

KEGG:

id description
K22190 MS4A3S; membrane-spanning 4-domains subfamily A member 3/4/8/12/15/18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012552 True 1939 mRNA 0.47 7 21269740 21274408

Neighbor

gene id symbol gene type direction distance location
AMCG00012547 NA coding downstream 38899 21224741 ~ 21230841 (-)
AMCG00012548 NA coding downstream 57724 21188177 ~ 21212016 (-)
AMCG00012545 NA coding downstream 148362 21120116 ~ 21121378 (-)
AMCG00012537 NA coding downstream 363979 20901724 ~ 20905761 (-)
AMCG00012527 NA coding downstream 407122 20859265 ~ 20862618 (-)
AMCG00012551 NA coding upstream 8893 21283301 ~ 21290412 (-)
AMCG00012554 NA coding upstream 75037 21349445 ~ 21358802 (-)
AMCG00012561 NA coding upstream 425643 21700051 ~ 21703968 (-)
AMCG00012562 NA coding upstream 464548 21738956 ~ 21740372 (-)
AMCG00012563 NA coding upstream 753210 22027618 ~ 22039234 (-)
G137628 LOC100380645,LOC107688237,LOC108256176,LOC106605293,LOC108433883,LOC107592459 non-coding downstream 100382 21166458 ~ 21169358 (-)
G137619 NA non-coding downstream 172444 21096922 ~ 21097296 (-)
G137605 NA non-coding downstream 175744 21030092 ~ 21093996 (-)
G137601 NA non-coding downstream 229973 21034530 ~ 21039767 (-)
G137591 NA non-coding downstream 313362 20951938 ~ 20956378 (-)
G137699 NA non-coding upstream 29064 21303472 ~ 21306761 (-)
G137701 NA non-coding upstream 33810 21308218 ~ 21315238 (-)
G137711 NA non-coding upstream 89884 21364292 ~ 21364924 (-)
G137709 NA non-coding upstream 150763 21425171 ~ 21426245 (-)
G137733 NA non-coding upstream 376355 21650763 ~ 21657742 (-)
AMCG00012541 NA other downstream 227297 21040089 ~ 21042443 (-)
G137608 NA other downstream 231309 21035163 ~ 21038431 (-)
G137408 NA other downstream 998876 20261002 ~ 20270864 (-)
AMCG00012503 NA other downstream 1359362 19903106 ~ 19910378 (-)
G137246 NA other downstream 1476209 19714162 ~ 19793531 (-)
AMCG00012559 NA other upstream 159256 21433664 ~ 21635426 (-)
AMCG00012556 NA other upstream 219819 21494227 ~ 21502199 (-)
AMCG00012564 NA other upstream 803765 22078173 ~ 22088469 (-)
AMCG00012566 NA other upstream 829245 22103653 ~ 22120556 (-)
G137974 LOC107575789 other upstream 1647475 22921883 ~ 23049378 (-)

Expression


Co-expression Network