AMCG00012564


Basic Information

Item Value
gene id AMCG00012564
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22078173 ~ 22088469 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012564
ATGTCAGgtctttttctcttctctcaaCAGCACTCAGACCTGGAGAAGGCCATTAATACTCTGGTCACCGAGTTCCATGCTGCTGCAGGTGATAATGGCAGTACGCTAAAGAGCAACGAGTTCAAAAGTCTCCTTTCCAGCCAGCTGCCCAACTTAGTCAAGGGTGTTAATGATGACCAGCTCATGGGAGACCTGATGAAGAAGCTGAACATCAAAGACAGTGAGGGGATCACCTTTAAAGAGTTCTGGGGATTAATTCAGCAACTGGCTACATCTCAGCATGGCCTGACCAGCCGAGACAAATCTGCAAAGTCTTGCCAGATCTTGTAA
>TU173345
CCTAAACATGAATGAAGCCCTTGCTAAAATGAAACGTGTCCCAAccattccttaaaaaaaagttcCAGACGTGTCCAAACGCTCCGGGGGTTGGCTTACATTTATTGTTAGTAACCTGAGCTTCGTGCATAGTATATTaatcatcataaaaaataacagctatttatttatatactaccGTATAATAGTTTGTTTCCCCTCCTTACCATATTTTGTTAACGTAGAGTATTGTATTGCAGCATTTTCCACAGTGATTTCCTTTCCTGCCATTACGGAAGGTGGAATCCAGTGGTGTTTAGAGAGTGGGAGGATTCGGGAAAGGAGCCAGGATACCGCAAGAGCGACGGGGCTCAGAGAACGAGAAGTCTGAGCTGTTCACTTCGCAAGGAAACTTCTTAGCAGGAAAGGCTTGGCTAGAAATGGCGGTGAAGCACTCAGACCTGGAGAAGGCCATTAATACTCTGGTCACCGAGTTCCATGCTGCTGCAGGTGATAATGGCAGTACGCTAAAGAGCAACGAGTTCAAAAGTCTCCTTTCCAGCCAGCTGCCCAACTTAGTCAAGGGTGTTAATGATGACCAGCTCATGGGAGACCTGATGAAGAAGCTGAACATCAAAGACAGTGAGGGGATCACCTTTAAAGAGTTCTGGGGATTAATTCAGCAACTGGCTACATCTCAGCATGGCCTGACCAGCCGAGACAAATCTGCAAAGTCTTGCCAGATCTTGTAAAACCTTGAATGGGTAGCAAGAATCCATTAGACCAGTGTTTTCCAAAACTGTCTTATTACCCTTCTTCCTGTCCAGGGTTTTGACCTAACCAGaacctgttcatttattttatgttgcgTAACATTGGCTATGTATTATTCTGGCCTTGGGTGTCTGTCTGCATGGACAGTTTGCATATTCTCCCTGTAGCTGTGTGGGTTCTCTAGAAGCTCTGGTTTCCTTCCATATCCCAAAGACATGGCTGATAAGGTTGATCAGCTACTCTAAATTTCCCTGTACTAAATTACCCACTAGACAAGACTGAGCAACCATTCCAGTCTTGAGTCATGTCAGGGACAAAGGGAATCTGAAAATACATTCTATATCAATACTGTGAGCCACTAAATTAGGGTTACTGGATACATAATATGAAATGTTCTTTCCATTGATTTGGTGGTAccataatattgtttaattcaatataatattgaatcatatattttttattttaaagttacagTACTCTGGCCATTATTTAGAATTAAACattcatgtaattaaaaaaaaaaaaaagataaaattgttaaat
>TU173346
CCTAAACATGAATGAAGCCCTTGCTAAAATGAAACGTGTCCCAAccattccttaaaaaaaagttcCAGACGTGTCCAAACGCTCCGGGGGTTGGCTTACATTTATTCATTTTCCACAGTGATTTCCTTTCCTGCCATTACGGAAGGTGGAATCCAGTGGTGTTTAGAGAGTGGGAGGATTCGGGAAAGGAGCCAGGATACCGCAAGAGCGACGGGGCTCAGAGAACGAGAAGTCTGAGCTGTTCACTTCGCAAGGAAACTTCTTAGCAGGAAAGGCTTGGCTAGAAATGGCGGTGAAGCACTCAGACCTGGAGAAGGCCATTAATACTCTGGTCACCGAGTTCCATGCTGCTGCAGGTGATAATGGCAGTACGCTAAAGAGCAACGAGTTCAAAAGTCTCCTTTCCAGCCAGCTGCCCAACTTAGTCAAGGGTGTTAATGATGACCAGCTCATGGGAGACCTGATGAAGAAGCTGAACATCAAAGACAGTGAGGGGATCACCTTTAAAGAGTTCTGGGGATTAATTCAGCAACTGGCTACATCTCAGCATGGCCTGACCAGCCGAGACAAATCTGCAAAGTCTTGCCAGATCTTGTAAAACCTTGAATGGGTAGCAAGAATCCATTAGACCAGTGTTTTCCAAAACTGTCTTATTACCCTTCTTCCTGTCCAGGGTTTTGACCTAACCAGaacctgttcatttattttatgttgcgTAACATTGGCTATGTATTATTCTGGCCTTGGGTGTCTGTCTGCATGGACAGTTTGCATATTCTCCCTGTAGCTGTGTGGGTTCTCTAGAAGCTCTGGTTTCCTTCCATATCCCAAAGACATGGCTGATAAGGTTGATCAGCTACTCTAAATTTCCCTGTACTAAATTACCCACTAGACAAGACTGAGCAACCATTCCAGTCTTGAGTCATGTCAGGGACAAAGGGAATCTGAAAATACATTCTATATCAATACTGTGAGCCACTAAATTAGGGTTACTGGATACATAATATGAAATGTTCTTTCCATTGATTTGGTGGTAccataatattgtttaattcaatataatattgaatcatatattttttattttaaagttacagTACTCTGGCCATTATTTAGAATTAAACattcatgtaattaaaaaaaaaaaaaagataaaattgttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012564 False 330 mRNA 0.47 2 22078741 22082729
TU173345 True 1299 TUCP 0.40 3 22078173 22088469
TU173346 False 1166 TUCP 0.42 4 22078173 22088469

Neighbor

gene id symbol gene type direction distance location
AMCG00012563 NA coding downstream 38939 22027618 ~ 22039234 (-)
AMCG00012562 NA coding downstream 337801 21738956 ~ 21740372 (-)
AMCG00012561 NA coding downstream 374205 21700051 ~ 21703968 (-)
AMCG00012554 NA coding downstream 719371 21349445 ~ 21358802 (-)
AMCG00012551 NA coding downstream 787761 21283301 ~ 21290412 (-)
AMCG00012565 NA coding upstream 63950 22152419 ~ 22165738 (-)
AMCG00012572 NA coding upstream 499671 22588140 ~ 22601168 (-)
AMCG00012574 NA coding upstream 513709 22602178 ~ 22608156 (-)
AMCG00012573 NA coding upstream 543474 22631943 ~ 22640196 (-)
AMCG00012575 NA coding upstream 630869 22719338 ~ 22777684 (-)
G137828 NA non-coding downstream 1358 22075685 ~ 22076815 (-)
G137742 NA non-coding downstream 390909 21687030 ~ 21687264 (-)
G137733 NA non-coding downstream 420431 21650763 ~ 21657742 (-)
G137709 NA non-coding downstream 651928 21425171 ~ 21426245 (-)
G137711 NA non-coding downstream 713249 21364292 ~ 21364924 (-)
G137842 LOC107575789 non-coding upstream 39476 22127945 ~ 22128292 (-)
G137847 NA non-coding upstream 92362 22180831 ~ 22181039 (-)
G137870 NA non-coding upstream 219972 22308441 ~ 22326347 (-)
G137934 NA non-coding upstream 635508 22723977 ~ 22724234 (-)
G137941 NA non-coding upstream 682455 22770924 ~ 22771248 (-)
AMCG00012559 NA other downstream 442747 21433664 ~ 21635426 (-)
AMCG00012556 NA other downstream 575974 21494227 ~ 21502199 (-)
AMCG00012541 NA other downstream 1035730 21040089 ~ 21042443 (-)
G137608 NA other downstream 1039742 21035163 ~ 21038431 (-)
G137408 NA other downstream 1807309 20261002 ~ 20270864 (-)
AMCG00012566 NA other upstream 15184 22103653 ~ 22120556 (-)
G137974 LOC107575789 other upstream 833414 22921883 ~ 23049378 (-)
G137996 NA other upstream 1014998 23103467 ~ 23120688 (-)
AMCG00012594 NA other upstream 1685008 23773477 ~ 23776880 (-)
G138207 NA other upstream 2146035 24234504 ~ 24234867 (-)

Expression


Co-expression Network