AMCG00012579


Basic Information

Item Value
gene id AMCG00012579
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22880359 ~ 22911656 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012579
CCTCTGACCAAGCTTACAGATGAAGGGGAAAATACTGTTGTGAGATGCAATCATAGCATCACAAACTTTCGGTCTATGTTCTGGTATTTACAGAGACCCGTTAAGGCTCCAGAAAACCTCATTCATGGATATGATTCTGCTCAACCCAATGGACGGTTCTCAATGATATTTGACAGAGACAATCGTGTGACACACCTTTCTATCACAAATACTGAAATAGAAGATGCAGCAACATATTACTGTGCAGTGGAGCCCACAGTGGTACACATTGAGGTTACACTGCTACAAAAACATATTGACGtatttttccacTGGGAATCAAATCTCTCAGAAGGAGGCAACAGTATGGGACAAGTAGCCATACTGCTGATTTTGCCAAAGAGCGATTCTCATCCACTGCAGACAAAAACATTGTACAGTTCTGTCAACACTAATACAAAAACCTTCTGTTATCAGAATGCCACAGAACTGCTCTTCGTTGTCTGGATGTACAAGGAAAAATACAGAGgtATAACACATGGAGACAAAATTGATTCTCAAAACCATGAGGTTTCTGCAGAAGAAGGTTCATCGGTAACATTAAACTGCTCTTATTCATCTACTGATACTGCACCCTATCTCTTCTGGTACCGACAGTTTCCTAACAGTGCTCCACAGTACATGGCAATGAGAGGAGCTGGATCTTCAAGTTCAGTGAAGCAGCAGAGTGATTTATTTACTGATCGTTTCTATTTGAAAGCTGAAAAAGACTCAACAAGTTTTTCAATCACAAGACTGCAAGTCAGTGATTCTGGCACATATCATTGTGCTCTGCAGCCCACAATGAGTCACTGCCAGGgTATAACACATGGAGACAAAATTGATTCTCAAAACCATGAGGTTTCTGCAGAAGAAGGTTCATCAGTAACATTAAACTGCTCTTATTCAACTACTGATCAAGCACCTTCTTTGTTCTGGTACCATCAGTTTCCTAACAGTGCTCCACAATATATGGCAATGAGAGGAGCTGGAACTCTCAGTTCACTGAAGCagcaaagtaatttatttactgAGCGTTTCCAGTCAAAAGCTGAAAAAGACTCAACAAGTTTTTCAATCACAAGATTGAAAATCAGTGATTCTGGCACATACCATTGTGCTCTGCAGCCCACAATGAGTCTCTGCCATGGTgcaactgaacaaaaacatAGTCCAGTTCTGCTGAGTATGACTGAAGGAGCAACAGTGACAATCAACTGCAGTTATATTAATTCTCATGTCAGTGTAATGcaaaatccaaatccaaatccaaacaAACCACCAGAAAATCTAGTGATAATTGTGCTGACAGAGACAATTGATCAGTTCAGTTCATCACTTAACAGAAGTAACAGATCTGGGGTTTTCAACATCAGTGATTCACAGACAGCAGACTGA
>TU173480
gtctctctctgttgtgtGCTGCAAAAAGTCTGCATATCAGCATTTGCTCGCaaaatgtgtgttgttgtgctttttttatgCAGTTTGTTCTatttttccacTGGGAATCAAATCTCTCAGAAGGAGGCAACAGTAGTAAGGACAGAAAAAGAGGAGGCTACACTGGAATGCACCTTCAGCTCAAGCACCACCAGCTATTACCTACACTGGTACCGCCAGTATCCCAGCACAGCTCCTCAGTTTTTACTTTTCAGTGGGACAAGTAGCCATACTGCTGATTTTGCCAAAGAGCGATTCTCATCCACTGCAGACAAAAACAGTGGTTTAACAACTTTAAAGATTTCTAGACTGCTACTGGAAGACAGCGCTATATATTACTGTGCACTGGAGCCC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012579 True 1416 mRNA 0.40 7 22880359 22911656
TU173480 False 393 TUCP 0.44 2 22887538 22888056

Neighbor

gene id symbol gene type direction distance location
AMCG00012581 NA coding upstream 17536 22860079 ~ 22862823 (+)
AMCG00012576 NA coding upstream 211015 22665481 ~ 22669344 (+)
AMCG00012577 NA coding upstream 292154 22585701 ~ 22588205 (+)
AMCG00012571 NA coding upstream 424798 22452135 ~ 22455561 (+)
AMCG00012570 NA coding upstream 450299 22390202 ~ 22430060 (+)
AMCG00012580 NA coding downstream 24614 22936270 ~ 22950900 (+)
AMCG00012578 NA coding downstream 49542 22961198 ~ 22966195 (+)
AMCG00012583 NA coding downstream 130832 23042488 ~ 23092426 (+)
AMCG00012585 NA coding downstream 275231 23186887 ~ 23230915 (+)
AMCG00012586 NA coding downstream 505945 23417601 ~ 23422278 (+)
G137851 NA non-coding upstream 554009 22308413 ~ 22326350 (+)
G137827 NA non-coding upstream 803489 22075843 ~ 22076870 (+)
G137814 NA non-coding upstream 874681 22005381 ~ 22005678 (+)
G137761 NA non-coding upstream 922005 21836242 ~ 21958354 (+)
G137754 NA non-coding upstream 1066496 21798503 ~ 21813863 (+)
G137951 LOC100846954,LOC107575789 non-coding downstream 9533 22921189 ~ 22922372 (+)
G137984 NA non-coding downstream 146430 23058086 ~ 23058391 (+)
G138010 NA non-coding downstream 251335 23162991 ~ 23163619 (+)
G138034 NA non-coding downstream 364008 23275664 ~ 23275950 (+)
G138042 NA non-coding downstream 886950 23798606 ~ 23843211 (+)
G137947 NA other upstream 61901 22817953 ~ 22818458 (+)
G137899 NA other upstream 314253 22565424 ~ 22566106 (+)
G137775 NA other upstream 922201 21932295 ~ 21958158 (+)
G137764 NA other upstream 1003817 21854706 ~ 21876542 (+)
G137629 NA other upstream 1548289 21270360 ~ 21332070 (+)
AMCG00012593 NA other downstream 785768 23697424 ~ 23742591 (+)

Expression


Co-expression Network