G131114



Basic Information


Item Value
gene id G131114
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 53722 ~ 60097 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU164296
CCCTGGGACAGGTCAGTGCTGCAGCCTCGCCCGTGTCCGTCTGTCCCGAGGAGTCCGGTCGTCTCTCTGGCTGAGGCagttgtgtctctgtgtctgtgtctgtttgtctgtgtgttgctgtctctctgtgtctctcactgtctgtctatgtgtgtgttagCTCTGCACTGTCTGAACTGCTATCCACTAGTGCTGCGTATAGGNNtgtgagagagggagtgtatgtgtgtgtgtgtgtgtgtttgggggttCCTTATT

Function


GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA


RNA id representative length rna type GC content exon number start site end site
TU164296 True 258 lncRNA 0.53 2 53722 60097

Neighbor


gene id symbol gene type direction distance location
AMCG00011574 psmb6,LOC105010830,LOC106603098 coding upstream 5480 65577 ~ 68783 (-)
AMCG00011578 LOC106593277,LOC105009281,LOC105904571,LOC105010828,LOC108414382,LOC107752256 coding upstream 62262 122359 ~ 138457 (-)
AMCG00011577 dlg4,LOC106603100 coding upstream 85326 145423 ~ 157396 (-)
AMCG00011583 NA coding upstream 194784 254881 ~ 260591 (-)
AMCG00011582 NA coding upstream 202294 262391 ~ 268054 (-)
G131149 NA non-coding upstream 4796 64893 ~ 65229 (-)
G131152 NA non-coding upstream 36686 96783 ~ 97829 (-)
G131244 NA non-coding upstream 300133 360230 ~ 360603 (-)
G131425 NA non-coding upstream 399413 459510 ~ 755699 (-)
G131426 NA non-coding upstream 401313 461410 ~ 462697 (-)
AMCG00011579 NA other upstream 105795 165892 ~ 212562 (-)
AMCG00011589 LOC100196315,LOC108414592,LOC106511660 other upstream 233355 293452 ~ 303915 (-)
G131420 NA other upstream 354420 414517 ~ 415154 (-)
G131456 NA other upstream 605280 665377 ~ 667310 (-)
AMCG00011597 mink1,LOC103395422,LOC107746403,LOC107596107 other upstream 639721 699818 ~ 720407 (-)

Expression



Co-expression Network