G131456


Basic Information

Item Value
gene id G131456
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 665377 ~ 667310 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU164816
ATGACGCACTTTGCGCCGCGAGCGACCGATCTCACGCTCCCGTAGGCAGACAGCGGGATTGCTGCCGGCGCATGCGCACACGCACCCGGTCACATCCTGTCCTGGATCGTAGCGGCGCTGCAGCCGACAGACAGCGGGGCGCCGGAGGTGACAGCCCCGACATAGACAGCAGTGCGGAGGGAGACAGGGATGAGAGGCTCTACAGGCGGAACCGACTGCAAATCAGtgagTGGAGAAGCCCAGGAGAGACTCCAAGTCCAGACGCCCCAGCGCCTCCCAGTCCCCCTGAGCTGAGGCTGGTGCTGCTGGGGAGGACTGGGGCTGGGAAAAGCGCGGCAGGAAACACCATCCTGGGCCGAGAGGAGTTTCCCTCTGAAGCCAGCAGCTCTGCAGTGACACAGGAGAGCGCCAAGAGAAGAGGACGCGTGGCTGGGAGACCGGTGGCTGTGGTGGACACACCAGACTGGTTGAgaagcattaaaaagaaattacagtgtgggaaaaaagtatttgatc
>TU164818
accgatcagccataacattatgagcactgacaggtgaagtgaatgacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcagagttgatgtgttagaagcaggaaaaatgggcagcgtgaggatctgagcgactttgacaagggccaaattgtgatgaggagctggagaaagagacagaggaatCCATACCGCCTCTCAAGAGGAGCAGCAtgagTGGAGAAGCCCAGGAGAGACTCCAAGTCCAGACGCCCCAGCGCCTCCCAGTCCCCCTGAGCTGAGGCTGGTGCTGCTGGGGAGGACTGGGGCTGGGAAAAGCGCGGCAGGAAACACCATCCTGGGCCGAGAGGAGTTTCCCTCTGAAGCCAGCAGCTCTGCAGTGACACAGGAGAGCGCCAAGAGAAGAGGACGCGTGGCTGGGAGACCGGTGGCTGTGGTGGACACACCAGACTGGTTGAgaagcattaaaaagaaattacagtgtgggaaaaaagtatttgatc

Function

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process
GO:0030903 notochord development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164816 False 516 TUCP 0.61 2 665377 667310
TU164818 True 541 lncRNA 0.53 2 665377 666287

Neighbor

gene id symbol gene type direction distance location
AMCG00011595 NA coding downstream 9072 655420 ~ 656305 (-)
AMCG00011594 NA coding downstream 45838 613140 ~ 619539 (-)
AMCG00011590 NA coding downstream 291187 373364 ~ 374190 (-)
AMCG00011588 NA coding downstream 344749 314019 ~ 320628 (-)
AMCG00011584 NA coding downstream 383236 280931 ~ 282141 (-)
AMCG00011599 NA coding upstream 19821 687131 ~ 691008 (-)
AMCG00011598 NA coding upstream 55774 723084 ~ 731850 (-)
AMCG00011602 NA coding upstream 292796 960106 ~ 965129 (-)
AMCG00011611 NA coding upstream 485116 1152426 ~ 1154789 (-)
AMCG00011608 NA coding upstream 497458 1164768 ~ 1176860 (-)
G131437 NA non-coding downstream 34952 627331 ~ 630425 (-)
G131428 NA non-coding downstream 105044 550039 ~ 560333 (-)
G131426 NA non-coding downstream 202680 461410 ~ 462697 (-)
G131244 NA non-coding downstream 304774 360230 ~ 360603 (-)
G131152 NA non-coding downstream 567548 96783 ~ 97829 (-)
G131460 NA non-coding upstream 26622 693932 ~ 698388 (-)
G131471 NA non-coding upstream 106867 774177 ~ 837898 (-)
G131477 NA non-coding upstream 180760 848070 ~ 854045 (-)
G131475 NA non-coding upstream 222973 890283 ~ 943901 (-)
G131507 NA non-coding upstream 427719 1095029 ~ 1176142 (-)
G131420 NA other downstream 250223 414517 ~ 415154 (-)
AMCG00011589 LOC100196315,LOC108414592,LOC106511660 other downstream 361462 293452 ~ 303915 (-)
AMCG00011579 NA other downstream 452815 165892 ~ 212562 (-)
AMCG00011597 mink1,LOC103395422,LOC107746403,LOC107596107 other upstream 32508 699818 ~ 720407 (-)
AMCG00011601 NA other upstream 122698 790008 ~ 810157 (-)
AMCG00011603 NA other upstream 331681 998991 ~ 1006137 (-)
AMCG00011640 NA other upstream 1018999 1686309 ~ 1704999 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other upstream 1040407 1707717 ~ 1719226 (-)

Expression


Co-expression Network