G131709


Basic Information

Item Value
gene id G131709
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 1866793 ~ 1879291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU165180
gagagacacagtccagtccagcagggtctcagccctggtcctgagagacacagtccagtccagcggggtctcggccctggtcctgagagacacagtccagtccagcagggtctcagccctggtcctgcagagacacagtccagtccaatcTCGATGAGAGCTCATCAGTCCATTGCACTGGCCCAGCTGCATGACAAGGAGTCCATTGTGGGGGGGAAATCCaattatgctttatttaattaagaaaacaaatgtttatctcattgtattttactttcaatccgtttatataattacatttatctgtattttatttttgtatgtattgaagATCTCAGGATGCATGTGCCCAGAGCTTCTGCCAGATGCTAttgaatgtaataataataatattgtatacaaGAAGTCCACCATAACATCATCTCCAAAGTCCTGGACCAAATTTCAACACCTTTTCAATGCAGCTCAATCAACAATGTGCTTTGAAACTCGACTCAGTCCCCAGTGGCGCATATTTGTTGGCAGTCCATTGCAACGCCGCTTCAAATGAGACGAGAAACCACTTGTGAAGTTTGACAGCTTTACAATTACATGTCGCAGCTCTTGTTCACAGTACGGAGATCGGCTTAAGTGTACtttgaataataaaatctaca
>TU165183
gagagacacagtccagtccagcagggtctcagccctggtcctgagagacacagtccagtccagcagggtctcagccctggtcctgcagagacacagtccagtccaatcTCGATGAGAGCTCATCAGTCCATTGCACTGGCCCAGCTGCATGACAAGGAGTCCATTGTGGGGGGGAAATCCaattatgctttatttaattaagaaaacaaatgtttatctcattgtattttactttcaatccgtttatataattacatttatctgtattttatttttgtatgtattgaagATCTCAGGATGCATGTGCCCAGAGCTTCTGCCAGATGCTAttgaatgtaataataataatattgtatacaaGAAGTCCACCATAACATCATCTCCAAAGTCCTGGACCAAATTTCAACACCTTTTCAATGCAGCTCAATCAACAATGTGCTTTGAAACTCGACTCAGTCCCCAGTGGCGCATATTTGTTGGCAGTCCATTGCAACGCCGCTTCAAATGAGACGAGAAACCACTTGTGAAGTTTGACAGCTTTACAATTACATGTCGCAGCTCTTGTTCACAGTACGGAGATCGGCTTAAGTGTACtttgaataataaaatctaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165180 True 656 lncRNA 0.44 2 1866793 1879291
TU165183 False 614 lncRNA 0.42 2 1866793 1879291

Neighbor

gene id symbol gene type direction distance location
AMCG00011650 NA coding downstream 41982 1818991 ~ 1824811 (-)
AMCG00011647 NA coding downstream 67687 1797632 ~ 1799106 (-)
AMCG00011642 NA coding downstream 94508 1767578 ~ 1772285 (-)
AMCG00011643 NA coding downstream 99228 1764743 ~ 1767565 (-)
AMCG00011641 NA coding downstream 116259 1742088 ~ 1750534 (-)
AMCG00011658 NA coding upstream 23081 1902372 ~ 1904818 (-)
AMCG00011659 NA coding upstream 32353 1911644 ~ 1915846 (-)
AMCG00011660 NA coding upstream 57444 1936735 ~ 1940512 (-)
AMCG00011657 NA coding upstream 99867 1979158 ~ 1983086 (-)
AMCG00011666 LOC107750560,LOC106608953,LOC107561748,LOC104962535,LOC105895561,LOC105027200 coding upstream 143417 2022708 ~ 2031267 (-)
G131691 NA non-coding downstream 21072 1775489 ~ 1845721 (-)
G131633 NA non-coding downstream 198113 1666554 ~ 1668680 (-)
G131625 NA non-coding downstream 223765 1642805 ~ 1643028 (-)
G131615 NA non-coding downstream 235033 1631457 ~ 1631760 (-)
G131604 NA non-coding downstream 260508 1606052 ~ 1606285 (-)
G131741 NA non-coding upstream 21302 1900593 ~ 1915550 (-)
G131751 NA non-coding upstream 68156 1947447 ~ 1948939 (-)
G131756 NA non-coding upstream 121118 2000409 ~ 2002192 (-)
G131833 NA non-coding upstream 179488 2058779 ~ 2059607 (-)
G131871 NA non-coding upstream 355321 2234612 ~ 2236805 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 2021 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 147567 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 161794 1686309 ~ 1704999 (-)
AMCG00011603 NA other downstream 860656 998991 ~ 1006137 (-)
AMCG00011601 NA other downstream 1056636 790008 ~ 810157 (-)
G131863 NA other upstream 414342 2293633 ~ 2296453 (-)
G132117 NA other upstream 581816 2461107 ~ 2461750 (-)
G132140 NA other upstream 687454 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 730437 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 763372 2642663 ~ 2643456 (-)

Expression


Co-expression Network