G131833


Basic Information

Item Value
gene id G131833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2058779 ~ 2059607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU165339
ttactaattaaaaagaaactacACTTGCTACTAATAAATGGTTGGATGTATTCTGCATGTACTCTTACAGTCAGACCACTTGTGTTTCTGCAGCACTATGAAATATACAGCAAAGTCATTggatttttctttcatgtttttaattaaatctatgTACACACAggcaaaattatataaattaccAAAGACCACACCACACTTGAAGTTGACTGCTGGGGATTTATAGTGCTGGAGGAAGTGGCTAACTTGGAGAGATAGAGATATACATCTTGTAACAGTTGTGTTCGTGGGGTGAGTAATCGGAGAGATTGTTGTGTTACTGAACGAGTGACTCATTGAAGCTGGGTGAGGTGACTGATATGGAAAGGGCAATGGCGACCTCTGGTGGGGGCATGTATACGTGCATTCAACTGTGGTTAAAGTGACTCCGGTTAggttgcatatatatactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtctagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165339 True 673 lncRNA 0.40 2 2058779 2059607

Neighbor

gene id symbol gene type direction distance location
AMCG00011667 NA coding downstream 5228 2052011 ~ 2053551 (-)
AMCG00011666 LOC107750560,LOC106608953,LOC107561748,LOC104962535,LOC105895561,LOC105027200 coding downstream 27512 2022708 ~ 2031267 (-)
AMCG00011657 NA coding downstream 75693 1979158 ~ 1983086 (-)
AMCG00011660 NA coding downstream 118267 1936735 ~ 1940512 (-)
AMCG00011659 NA coding downstream 142933 1911644 ~ 1915846 (-)
AMCG00011673 NA coding upstream 38041 2097648 ~ 2116839 (-)
AMCG00011672 acadvl,LOC107738021,LOC107595296,LOC107731915,LOC107597078 coding upstream 95472 2155079 ~ 2180288 (-)
AMCG00011678 dvl2,LOC102202272 coding upstream 128646 2188253 ~ 2196227 (-)
AMCG00011679 NA coding upstream 138513 2198120 ~ 2199948 (-)
AMCG00011681 gbrap,gabarap,LOC106577557 coding upstream 148214 2207821 ~ 2213289 (-)
G131756 NA non-coding downstream 56587 2000409 ~ 2002192 (-)
G131751 NA non-coding downstream 109840 1947447 ~ 1948939 (-)
G131741 NA non-coding downstream 143229 1900593 ~ 1915550 (-)
G131709 NA non-coding downstream 179488 1866793 ~ 1879291 (-)
G131691 NA non-coding downstream 213058 1775489 ~ 1845721 (-)
G131871 NA non-coding upstream 175005 2234612 ~ 2236805 (-)
G131873 NA non-coding upstream 187164 2246771 ~ 2247129 (-)
G131884 NA non-coding upstream 218626 2278233 ~ 2278516 (-)
G131864 NA non-coding upstream 227262 2286869 ~ 2298484 (-)
G131889 LOC107384710,LOC100693841,LOC103365478,LOC106560692,LOC106602896,LOC107098142,LOC102777155,LOC105007919,LOC101477102 non-coding upstream 229903 2289510 ~ 2292486 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 194007 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 339553 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 353780 1686309 ~ 1704999 (-)
AMCG00011603 NA other downstream 1052642 998991 ~ 1006137 (-)
AMCG00011601 NA other downstream 1248622 790008 ~ 810157 (-)
G131863 NA other upstream 234026 2293633 ~ 2296453 (-)
G132117 NA other upstream 401500 2461107 ~ 2461750 (-)
G132140 NA other upstream 507138 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 550121 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 583056 2642663 ~ 2643456 (-)

Expression


Co-expression Network