G132078


Basic Information

Item Value
gene id G132078
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2415483 ~ 2447423 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU165624
TTTTTCCCAGTAAggcaaatttgtttttatttgaagtataaaagttaatttttttttttttttgtgtgtttcatacAAATTgaactttataaaaaaacaaaacaaaaacaaacctgaaCCCTTTTTGGTTACCGGCGCCACGATCTGATAGGGGAAAGATGAGACGGGTCTGCCACTGAACCGAGCACTTAACCTATATAGCACGTTTCACCCCGAGAGAtcccaaagcactttacaacTGAAGCCAGCACAGTGGGTTGTCCCTCGACCTGGGGGAGTGTGTGCGTGCCGTCGGTTCACTCCCAATGGAGGCGGAGGGGCTCTAGGTTacccttgtttttgtttggcagCCGGAGGGGGGGGGACTTTTTGAAAAGTGCGGTGGTAAAAAACCAACAGAGGGGGTCAGGGAGGTGACTGGACGAAACGATGAGACTGGGACATGGCAGagagtgtgtgtgtgtgtgtgtgtgtgtgagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165624 True 485 lncRNA 0.47 2 2415483 2447423

Neighbor

gene id symbol gene type direction distance location
AMCG00011697 eif5a,LOC107691471 coding downstream 22111 2387612 ~ 2393372 (-)
AMCG00011691 NA coding downstream 49489 2362204 ~ 2365994 (-)
AMCG00011693 NA coding downstream 57139 2355679 ~ 2358344 (-)
AMCG00011690 NA coding downstream 77630 2336665 ~ 2337853 (-)
AMCG00011692 NA coding downstream 97895 2313629 ~ 2317588 (-)
AMCG00011699 NA coding upstream 20805 2468228 ~ 2473307 (-)
AMCG00011700 capgb,capg,LOC107665882,LOC107657288,LOC107556576,LOC107584402,LOC107733451 coding upstream 33668 2481091 ~ 2485730 (-)
AMCG00011703 polr2a coding upstream 48641 2496064 ~ 2510692 (-)
AMCG00011709 NA coding upstream 144436 2591859 ~ 2599202 (-)
AMCG00011710 NA coding upstream 192040 2639463 ~ 2641522 (-)
G131913 NA non-coding downstream 86501 2328597 ~ 2328982 (-)
G131909 NA non-coding downstream 87775 2327127 ~ 2327708 (-)
G131905 NA non-coding downstream 95485 2317940 ~ 2319998 (-)
G131864 NA non-coding downstream 116999 2286869 ~ 2298484 (-)
G131889 LOC107384710,LOC100693841,LOC103365478,LOC106560692,LOC106602896,LOC107098142,LOC102777155,LOC105007919,LOC101477102 non-coding downstream 122997 2289510 ~ 2292486 (-)
G132116 NA non-coding upstream 12325 2459748 ~ 2459961 (-)
G132126 NA non-coding upstream 44920 2492343 ~ 2499180 (-)
G132129 NA non-coding upstream 64080 2511503 ~ 2515213 (-)
G132137 NA non-coding upstream 103033 2550456 ~ 2551120 (-)
G132138 NA non-coding upstream 104935 2552358 ~ 2553259 (-)
G131863 NA other downstream 119030 2293633 ~ 2296453 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 550711 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 696257 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 710484 1686309 ~ 1704999 (-)
AMCG00011603 NA other downstream 1409346 998991 ~ 1006137 (-)
G132117 NA other upstream 13684 2461107 ~ 2461750 (-)
G132140 NA other upstream 119322 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 162305 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 195240 2642663 ~ 2643456 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 722285 3169708 ~ 3173836 (-)

Expression


Co-expression Network