G132140


Basic Information

Item Value
gene id G132140
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2566745 ~ 2577837 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU165693
aaataagtctGTGTGAAAGAGAGCCCAAGACCAGTTCAGTGTGTCATTGGACAGTCATTTATTCAGAATATCTGGGTAAAGAGTATAGACCAAAACAAAGCAGTAAAGTTAGTAAAGACAACAACACTTAGAACTTTTATTGCCCTCACTGGAAAAGATGGTCTTCTATGTTATATAGCGATGCGAACACTTCTTGTGCCAGCGATTGACTCTGCTGGCCGTTACCCCCCTGCTTCTCTTTCTTCCACACCGTGTGTCCGATGAAGTGCAGCCACATGCTGTCGTTGCTGAGATACTGCCCCACCTCCGACTTCGGGATCAGGTCTTCCTCTCTGTTCTCTTGCCCTGGTTTGGTGTCAAACGTTCTCACGCCAGTGACGAACCAGCTGCCGTTGTGGAAGCTCTGCAGCAGCACCGTCAGGCTGTGTTCGTGGGGATCCTGCTGCCCGTTGCACTGCTCTACTCTCCATGTCAGTGCTCTGTTGTTACTTTCCTTCTGGACATATTTGGTTCTGCTGTGTCTGCTATGTAGGTCATACTTTTTCTCCACAACCGTTATGGTTTCTCCTTTGGGGTGAAATGTGAGGGCCCATGCACAGTCCGCCAGCATGGCCTTGGACCTGAATTTGATGTTGTGCGCTTGTTTGGCCTGATCGCTGTATCCGTGTATCTGCCACCGAGTCCCGTTGTCGGTGGATTTGTAGAGCCGCGGGGAGAACGCAGCCGAACTGACAGTGTTGTTCTGGCTGAGGATTTCGATATCCACTGAGTTGGCCTGGTAGGTCAGGACGCCCTGTTTCTCAATATACCTGCAGATGTCTGTGTCCCCTTTATGCCCAGCCTGGTAGTGATAGAGCTCGTTGGCTTTAATCATGGGGAACCTTATGTGCTGCAGTACAGTGGGGGTCTCCTCTGGGTGGCCCGCCAGCCAGTCAACAGCGGCCTTTAACAAAGTCATTTCGCTCTCCACGANNNNNNNNNNNCTTTGGAGAAGGTCGCACAGGTAAGCGGAGTCAATGGACCTCCAGACAGGAGAATGGATCACTGTGTCCATATTCCAGGCAATGAATCTATCACAGGCTTCCTTCAGCTCGGTGAGGTCAGCCAGTTTGGCGTATTGTCTCCACTGGATGGCTCGGTTACACTTGCCCGGTGTG
>TU165695
aaataagtctGTGTGAAAGAGAGCCCAAGACCAGTTCAGTGTGTCATTGGACAGTCATTTATTCAGAATATCTGGGTAAAGAGTATAGACCAAAACAAAGCAGTAAAGTTAGTAAAGACAACAACACTTAGAACTTTTATTGCCCTCACTGGAAAAGATGGTCTTCTATGTTATATAGCGATGCGAACACTTCTTGTGCCAGCGATTGACTCTGCTGGCCGTTACCCCCCTGCTTCTCTTTCTTCCACACCGTGTGTCCGATGAAGTGCAGCCACATGCTGTCGTTGCTGAGATACTGCCCCACCTCCGACTTCGGGATCAGGTCTTCCTCTCTGTTCTCTTGCCCTGGTTTGGTGTCAAACGTTCTCACGCCAGTGACGAACCAGCTGCCGTTGTGGAAGCTCTGCAGCAGCACCGTCAGGCTGTGTTCGTGGGGATCCTGCTGCCCGTTGCACTGCTCTACTCTCCATGTCAGTGCTCTGTTGTTACTTTCCTTCTGGACATATTTGGTTCTGCTGTGTCTGCTATGTAGGTCATACTTTTTCTCCACAACCGTTATGGTTTCTCCTTTGGGGTGAAATGTGAGGGCCCATGCACAGTCCGCCAGCATGGCCTTGGACCTGAATTTGATGTTGTGCGCTTGTTTGGCCTGATCGCTGTATCCGTGTATCTGCCACCGAGTCCCGTTGTCGGTGGATTTGTAGAGCCGCGGGGAGAACGCAGCCGAACTGACAGTGTTGTTCTGGCTGAGGATTTCGATATCCACTGAGTTGGCCTGGTAGGTCAGGACGCCCTGTTTCTCAATATACCTGCAGATGTCTGTGTCCCCTTTATGCCCAGCCTGGTAGTGATAGAGCTCGTTGGCTTTAATCATGGGGAACCTTATGTGCTGCAGTACAGTGGGGGTCTCCTCTGGGTGGCCCGCCAGCCAGTCAACAGCGGCCTTTAACAAAGTCATTTCGCTCTCCACGACCAGGTCGGATCTTTGGAGAAGGTCGCACAGGTAAGCGGAGTCAATGGACCTCCAGACAGGAGAACGGATCACTGTGTCCATATTCCAGGGAATGAATCTATCACAGGCTTCCTTCAGCTCGGTGAGGTCAGCCAGTTTGGCGTATTGTCTCCACTGGATGGCTCGGTTACACTTGCCCGGTGTG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU165693 True 1157 TUCP 0.51 2 2566745 2577837
TU165695 False 1157 TUCP 0.51 2 2566745 2577837

Neighbor

gene id symbol gene type direction distance location
AMCG00011703 polr2a coding downstream 56053 2496064 ~ 2510692 (-)
AMCG00011700 capgb,capg,LOC107665882,LOC107657288,LOC107556576,LOC107584402,LOC107733451 coding downstream 81015 2481091 ~ 2485730 (-)
AMCG00011699 NA coding downstream 93438 2468228 ~ 2473307 (-)
AMCG00011698 NA coding downstream 150149 2403971 ~ 2416596 (-)
AMCG00011697 eif5a,LOC107691471 coding downstream 173373 2387612 ~ 2393372 (-)
AMCG00011709 NA coding upstream 14022 2591859 ~ 2599202 (-)
AMCG00011710 NA coding upstream 61626 2639463 ~ 2641522 (-)
AMCG00011707 LOC105907188,LOC103386604,LOC106608754,LOC103358028 coding upstream 78392 2656229 ~ 2656728 (-)
AMCG00011716 NA coding upstream 171357 2749194 ~ 2776484 (-)
AMCG00011715 NA coding upstream 206923 2784760 ~ 2785717 (-)
G132138 NA non-coding downstream 13486 2552358 ~ 2553259 (-)
G132137 NA non-coding downstream 15625 2550456 ~ 2551120 (-)
G132129 NA non-coding downstream 51532 2511503 ~ 2515213 (-)
G132126 NA non-coding downstream 67565 2492343 ~ 2499180 (-)
G132116 NA non-coding downstream 106784 2459748 ~ 2459961 (-)
G132151 NA non-coding upstream 56459 2634296 ~ 2634952 (-)
G132155 NA non-coding upstream 67736 2645573 ~ 2647388 (-)
G132166 NA non-coding upstream 147830 2725667 ~ 2726283 (-)
G132233 NA non-coding upstream 423200 3001037 ~ 3042256 (-)
G132261 NA non-coding upstream 500694 3078531 ~ 3089532 (-)
G132117 NA other downstream 104995 2461107 ~ 2461750 (-)
G131863 NA other downstream 270292 2293633 ~ 2296453 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 701973 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 847519 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 861746 1686309 ~ 1704999 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 31891 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 64826 2642663 ~ 2643456 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 591871 3169708 ~ 3173836 (-)
G132352 NA other upstream 623533 3201370 ~ 3207354 (-)
AMCG00011745 NA other upstream 658302 3236139 ~ 3240000 (-)

Expression


Co-expression Network