G132261



Basic Information


Item Value
gene id G132261
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3078531 ~ 3089532 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU165850
GGGAGGTAGAGAGAAACAAGTTCACCTTGAATTGAAacgcaaaataataataaaaaagaccaCTAAAAATAAGACATGACTCCCCCCTGTCCCCCCTCTCTCGCCTCTAACACACAAACCCCGTACCTCCGCGCAATGCGCCCTGCGTCGCTGTCACTCCGGCGGTCTGCGGTGCTGGCGGCGGGTCGGGctcgctgctgctgccgctCTGGGGAGGCGCTGCACCGGTGAGACTGGGCAGCTCTCTCCGCATCCGGCAGGCCCGCAGTGGTGCGACCCCGGCTGTGCCCTGCTGGCTAGCGGGCTCCGCAGTGTGCAGCGCCGGAGAGAGGAGCAGGATCGTCCCCGTACAAGGCGGTGTGGAGGCGATCCTGACCCAGTGTAGTCCCAGTTCCGCTGCGATGGAGGCGCAGCTCGAGACGATCCATCAGAGGGGAGCAGGATAGACCTAGTACCCCAACCAAAGGAGTGGGCCTCCTTCAATCTAGGACTCGGAGTACACTGACTAGATCAGGCTAGGAGTAGCCCCACCTGTCTCCAGGGTCTCTCCTCTGGCCATGGGTTTCTTCGTTCCTTAATTCTGCCTCTCCCCCGTCAATGCAATGGAGGAGACTTCAGTTTAGTAGACACATCTCACAGAAAGGACCCTAGGGGTACCAGAAGACGATCCAGATGGGGAGGTTTGGGAGAAAGTaggaggaaagaaaagacaAGGGGTGGACAGAGAGGATAAATCTATCAAGACCGAGGGGCATCTGGACACCGCAGGACAGCTATGGCAGCTTCGTGACTGAAACCACTCCAGGGTCCACACAGGaaccacagaaaacaatgcaCCACCAGAACTGAATTAACCACTTCTGTAGAATTGAGTGATAACCTAGTTTTACCTAAGACAtgcttttagttttaattttttttgttgttgttttgtttgatttaattgaatt
>TU165852
GGGAGGTAGAGAGAAACAAGTTCACCTTGAATTGAAacgcaaaataataataaaaaagaccaCTAAAAATAAGACATGACTCCCCCCTGTCCCCCCTCTCTCGCCTCTAACACACAAACCCCGTACCTCCGCGCAATGCGCCCTGCGTCGCTGTCACTCCGGCGGTCTGCGGTGCTGGCGGCGGGTCGGGctcgctgctgctgccgctCTGGGGAGGCGCTGCACCGGTGAGACTGGGCAGCTCTCTCCGCATCCGGCAGGCCCGCAGTGGTGCGACCCCGGCTGTGCCCTGCTGGCTAGCGGGCTCCGCAGTGTGCAGCGCCGGAGAGAGGAGCAGGATCGTCCCCGTACAAGGCGGTGTGGAGGCGATCCTGACCCAGTGTAGTCCCAGTTCCGCTGCGATGGAGGCGCAGCTCGAGACGATCCATCAGAGGGGAGCAGGATAGACCTAGTACCCCAACCAAAGGAGTGGGCCTCCTTCAATCTAGGACTCGGAGTACACTGACTAGATCAGGCTAGGAGTAGCCCCACCTGTCTCCAGGGTCTCTCCTCTGGCCATGGGTTTCTTCGTTCCTTAATTCTGCCTCTCCCCCGTCAATGCAATGGAGGAGACTTCAGTTTAGTAGACACATCTCACAGAAAGGTATGGGCTTTGCTCCTAAAGACTTGAACTGCCCAGTGAAGCtgccacataaaaaaaagatgtcTGAGGACCCTAGGGGTACCAGAAGACGATCCAGATGGGGAGGTTTGGGAGAAAGTaggaggaaagaaaagacaAGGGGTGGACAGAGAGGATAAATCTATCAAGACCGAGGGGCATCTGGACACCGCAGGACAGCTATGGCAGCTTCGGTGAGTGTAAGGAGAACAGAGGAGTGGCTGGTCCATAGCCTGACCTGCCAGGAGTTCCATACCTGGAGAAAAAGGTAGTGGAATAATGTACTGAGATGATGGGAGCTAAGGCTTTTGGGACAGAGGAGCAGTTGACTGAAGAAAGCAAGGAAAGGGAAGGGAAGAAAGGAGAATTCCCCCTAAGCAAGAAGATCTTAGACCAGTCTATGATGAGAACCATAAGATATTTTTCTATGAGAGTGTGGAGGATGGGAGATGAAAGGGTGCACTTTATAACTGGTTTGGTCTGGAAGTCTTTGGATTCCCCTCAGAGCTGCTCCCTGCCTCCAGGGGAGCAAAGCATGGCCTAGACTTGCTGCTCTCTATAGTACAAATGTTTGAATTTAGCTCCTGTGTGCTGCCTGACTGGCTCTTTGTCTTTTTCAGTGACTGAAACCACTCCAGGGTCCACACAGGaaccacagaaaacaatgcaCCACCAGAACTGAATTAACCACTTCTGTAGAATTGAGTGATAACCTAGTTTTACCTAAGACAtgcttttagttttaattttttttgttgttgttttgtttgatttaattgaatt

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU165850 False 950 lncRNA 0.54 4 3078531 3089532
TU165852 True 1444 lncRNA 0.52 3 3078531 3089532

Neighbor


gene id symbol gene type direction distance location
AMCG00011734 NA coding downstream 12579 3055916 ~ 3065952 (-)
AMCG00011730 NA coding downstream 93737 2975551 ~ 2984794 (-)
AMCG00011727 NA coding downstream 115904 2954437 ~ 2962627 (-)
AMCG00011726 NA coding downstream 132638 2938292 ~ 2945893 (-)
AMCG00011729 NA coding downstream 156300 2919841 ~ 2922231 (-)
AMCG00011742 NA coding upstream 47453 3136985 ~ 3138296 (-)
AMCG00011748 NA coding upstream 110155 3199687 ~ 3201575 (-)
AMCG00011746 NA coding upstream 114020 3203552 ~ 3207354 (-)
AMCG00011747 NA coding upstream 122192 3211724 ~ 3214816 (-)
AMCG00011744 NA coding upstream 152668 3242200 ~ 3253579 (-)
G132233 NA non-coding downstream 36275 3001037 ~ 3042256 (-)
G132166 NA non-coding downstream 352248 2725667 ~ 2726283 (-)
G132155 NA non-coding downstream 431143 2645573 ~ 2647388 (-)
G132151 NA non-coding downstream 443579 2634296 ~ 2634952 (-)
G132138 NA non-coding downstream 525272 2552358 ~ 2553259 (-)
G132362 NA non-coding upstream 194289 3283821 ~ 3289291 (-)
G132392 NA non-coding upstream 330744 3420276 ~ 3432121 (-)
G132395 NA non-coding upstream 351863 3441395 ~ 3457472 (-)
G132434 NA non-coding upstream 478355 3567887 ~ 3568440 (-)
G132482 NA non-coding upstream 539230 3628762 ~ 3702912 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other downstream 435075 2642663 ~ 2643456 (-)
AMCG00011711 neurl4,LOC106577658 other downstream 461203 2609728 ~ 2617328 (-)
G132140 NA other downstream 500694 2566745 ~ 2577837 (-)
G132117 NA other downstream 616781 2461107 ~ 2461750 (-)
G131863 NA other downstream 782078 2293633 ~ 2296453 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 80176 3169708 ~ 3173836 (-)
G132352 NA other upstream 111838 3201370 ~ 3207354 (-)
AMCG00011745 NA other upstream 146607 3236139 ~ 3240000 (-)
AMCG00011765 NA other upstream 780300 3869832 ~ 3879185 (-)
AMCG00011775 NA other upstream 847952 3937484 ~ 3944519 (-)

Expression



Co-expression Network