G132362


Basic Information

Item Value
gene id G132362
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3283821 ~ 3289291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU165992
TGTGGaagtaaagttagaaattcccctcacaaatggtttacttcatgtatacttaagaaagataaggtcaagtcaacagccaggccagaaggtagttcgacccctgtttgttattttcgatgagcatcttggagaagatgacaaacagtatgatttcaGTGTCTGCTCCTTAATCCTTGTATTGACCCATGGACTCTGTcctttaataatatattctgcttagcaagcttgtaagataacatagtaattacttattaattgtatccagatctttgttttctgtctataaaaagctctgacttttTACATGAAAGCAGAGCagctttgggatcttcttgattcactggtGTTCTCCATGTcacgtgtaataaaggcattgcaacgaacgttccaacctgattgaagatgattgttcttccacattACATGGCGACGAGGATCGGGACCGCTAACCCTGACGGAGAGGACCGGAGTGGCCAGACCAGTGACTAGCAAAGCCACCCCGGCAAAATATTAAGGACTGTCATCCATTTCAACCAGGTACATCAAAGCACACAAGAGAAAGTCCTCCCAGCAGCCCAGGTGGACAGGGCCCTACCAGGTGCTCCAGACCGCCCACACCGCTGTGAAGTGCCAAGAGAAACGACATGGATCCACTTGCCAATCAAAGCAATCAAAACAACACTGGTGGAGACCAGAGAGATGCTCCCCCTTCGACTAGATCCTCTTCCTCATTGCCTGTGGGACCATCTTCTGCACCATAACAGCCAGGGAAAGAGAGCGCTTCAGTGCCTAGCCAATGGGATCATCACTGATTGAGACAATCAGTCCAGAAGCAGCTGACATCATCATCCACCTCCAGCTAATGAGGCCAGCACAGGGCCAGACGCATGGGTCCACAAATACCGGGTGATGTGCTAGTAACCTCTCACCTTTTGCATattgacacacagacactatcACATTACACTGATCAAAAACGACTGAGGATTCGACAATGACGACAAAGCCACCTGATGAGAGAGAACACCCATCTCCAACTGTCCTACCAGTTTACTAAAAGACTTGAATATATCAGGGTGCTGAGTGTGCTCACATGTGCCCCACAGTGCTCTGTGAGGAATTCCCATGATCCCCATCCCTCTCACAGTTTGAAGACGTCTGTGCTGACCGGAACAGATACAATAGAAACATGATAAAACTGCTGATGTTGATAACGTAACAGCTGAAATGGTTCCCATATGGTGTTACAGAATTGCCAAGCCCTAGTTTTCTCTCTTGCAGCAAAAGGAGGGTGTGCACTCATTGGTAAAGAATGTTGTACCTATATACCTTATAACCTGAACAGATTCATGATCTTACAGATCACATTTGGAAAAAAGTAACTCAAATTCACCAGACCCTGGAGTGGTCTCTGGGGAGCTGGATAAGTGGATTCCTAGGAAACCTTGGTGCTCTTATAAGCCCAAGAATTGACTTGTATTCTTGGAATATTCatatttctctgttttgtgttgtttcagtgttgttgtgtttgcaCTGCCAAAGAAATGCAGATAAGCCTCACTCCTTCTGAAATGAAAgagtatgttaaaataatgaatgaagaaaTGCATGGTGGACAATATGTAACTTTACTGCTAGATGATATACacatgaatatatatgaatatgaatgttatGTATGTGCTGCTGTTCCCCATTCTGCAGACTCCC
>TU165993
TGTGGaagtaaagttagaaattcccctcacaaatggtttacttcatgtatacttaagaaagataaggtcaagtcaacagccaggccagaaggtagttcgacccctgtttgttattttcgatgagcatcttggagaagatgacaaacagtatgatttcaGTGTCTGCTCCTTAATCCTTGTATTGACCCATGGACTCTGTcctttaataatatattctgcttagcaagcttgtaagataacatagtaattacttattaattgtatccagatctttgttttctgtctataaaaagctctgacttttTACATGAAAGCAGAGCagctttgggatcttcttgattcactggtGTTCTCCATGTcacgtgtaataaaggcattgcaacgaacgttccaacctgattgaagatgattgttcttccacattACATGGCGACGAGGATCGGGACCGCTAACCCTGACGGAGAGGACCGGAGTGGCCAGACCAGTGACTAGCAAAGCCACCCCGGCAAAATATTAAGGTACATCAAAGCACACAAGAGAAAGTCCTCCCAGCAGCCCAGGTGGACAGGGCCCTACCAGGTGCTCCAGACCGCCCACACCGCTGTGAAGTGCCAAGAGAAACGACATGGATCCACTTGCCAATCAAAGCAATCAAAACAACACTGGTGGAGACCAGAGAGATGCTCCCCCTTCGACTAGATCCTCTTCCTCATTGCCTGTGGGACCATCTTCTGCACCATAACAGCCAGGGAAAGAGAGCGCTTCAGTGCCTAGCCAATGGGATCATCACTGATTGAGACAATCAGTCCAGAAGCAGCTGACATCATCATCCACCTCCAGCTAATGAGGCCAGCACAGGGCCAGACGCATGGGTCCACAAATACCGGGTGATGTGCTAGTAACCTCTCACCTTTTGCATattgacacacagacactatcACATTACACTGATCAAAAACGACTGAGGATTCGACAATGACGACAAAGCCACCTGATGAGAGAGAACACCCATCTCCAACTGTCCTACCAGTTTACTAAAAGACTTGAATATATCAGGGTGCTGAGTGTGCTCACATGTGCCCCACAGTGCTCTGTGAGGAATTCCCATGATCCCCATCCCTCTCACAGTTTGAAGACGTCTGTGCTGACCGGAACAGATACAATAGAAACATGATAAAACTGCTGATGTTGATAACGTAACAGCTGAAATGGTTCCCATATGGTGTTACAGAATTGCCAAGCCCTAGTTTTCTCTCTTGCAGCAAAAGGAGGGTGTGCACTCATTGGTAAAGAATGTTGTACCTATATACCTTATAACCTGAACAGATTCATGATCTTACAGATCACATTTGGAAAAAAGTAACTCAAATTCACCAGACCCTGGAGTGGTCTCTGGGGAGCTGGATAAGTGGATTCCTAGGAAACCTTGGTGCTCTTATAAGCCCAAGAATTGACTTGTATTCTTGGAATATTCatatttctctgttttgtgttgtttcagtgttgttgtgtttgcaCTGCCAAAGAAATGCAGATAAGCCTCACTCCTTCTGAAATGAAAgagtatgttaaaataatgaatgaagaaaTGCATGGTGGACAATATGTAACTTTACTGCTAGATGATATACacatgaatatatatgaatatgaatgttatGTATGTGCTGCTGTTCCCCATTCTGCAGACTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165992 True 1716 lncRNA 0.44 2 3283821 3289291
TU165993 False 1694 lncRNA 0.44 2 3283821 3289291

Neighbor

gene id symbol gene type direction distance location
AMCG00011744 NA coding downstream 30242 3242200 ~ 3253579 (-)
AMCG00011747 NA coding downstream 69005 3211724 ~ 3214816 (-)
AMCG00011746 NA coding downstream 76467 3203552 ~ 3207354 (-)
AMCG00011748 NA coding downstream 82246 3199687 ~ 3201575 (-)
AMCG00011742 NA coding downstream 145525 3136985 ~ 3138296 (-)
AMCG00011751 NA coding upstream 54143 3343434 ~ 3348414 (-)
AMCG00011752 NA coding upstream 61162 3350453 ~ 3357400 (-)
AMCG00011753 NA coding upstream 74795 3364086 ~ 3391464 (-)
AMCG00011756 NA coding upstream 210349 3499640 ~ 3502460 (-)
AMCG00011758 NA coding upstream 226078 3515369 ~ 3520747 (-)
G132261 NA non-coding downstream 194289 3078531 ~ 3089532 (-)
G132233 NA non-coding downstream 241565 3001037 ~ 3042256 (-)
G132166 NA non-coding downstream 557538 2725667 ~ 2726283 (-)
G132155 NA non-coding downstream 636433 2645573 ~ 2647388 (-)
G132151 NA non-coding downstream 648869 2634296 ~ 2634952 (-)
G132392 NA non-coding upstream 130985 3420276 ~ 3432121 (-)
G132395 NA non-coding upstream 152104 3441395 ~ 3457472 (-)
G132434 NA non-coding upstream 278596 3567887 ~ 3568440 (-)
G132482 NA non-coding upstream 339471 3628762 ~ 3702912 (-)
G132504 NA non-coding upstream 464537 3753828 ~ 3785207 (-)
AMCG00011745 NA other downstream 43821 3236139 ~ 3240000 (-)
G132352 NA other downstream 76467 3201370 ~ 3207354 (-)
AMCG00011741 LOC107676000,LOC107586166 other downstream 109985 3169708 ~ 3173836 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other downstream 640365 2642663 ~ 2643456 (-)
AMCG00011711 neurl4,LOC106577658 other downstream 666493 2609728 ~ 2617328 (-)
AMCG00011765 NA other upstream 580541 3869832 ~ 3879185 (-)
AMCG00011775 NA other upstream 648193 3937484 ~ 3944519 (-)
G132642 NA other upstream 875340 4164631 ~ 4166439 (-)
G132667 NA other upstream 929258 4218549 ~ 4218983 (-)
G132693 NA other upstream 1185314 4474605 ~ 4476979 (-)

Expression


Co-expression Network