G132596


Basic Information

Item Value
gene id G132596
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4109513 ~ 4111930 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166266
AAAACATCTATTATATAGACATAGAAAAGTTGCAATGTTTTcttgtcaaattaaaaaaagattggcTTCCTTTTTTCTTCACATAGTCAATGCTGCTTGCcactcacaaacaaacaacaataacactgaCTTACAAGAGCTTATTCACACACCCAACATAAAGAACTGCAGCAGAGTTAAggcatattttttattttagattttagataaGTGATTATTGTCATAGATGTGAAATCTACACAACATGGCAACAATTCAGATTAGAATACAAGCATGACTCAAATATAAACACTAAAGTTAGTCACATTTTAACAGCAGTGTTAGAAACTAAAACGAACAGTtactaatcatttaaaaaaacatcagaacACAAACTGGAAAATCGGTCAACTACGTAGTTCTGGGTAAGGATTCTGCTAATAATAAAGTCAAGAACTGCAACAGTATTTCACCATAgtaatgtacttaatgtgtggTACAGATCTGTGACGTTCACTGCTGGAGAATGGAATCAGACACAGAACTGTGTGAATTTCCCAGACAAACACTGATGTCTAACTGCTGTGTCTGACAAAGATCTACTCCTGCAGTTTCCTGCAGTCACAAGTATTTCAAAGTCAGCAGCTGTCTTCTGGAAgttcttaaaaatgtttataatctGAGCTAAGGAAAATTTGCATGGACTACTATGGTAGTGACTACTTTGTGGTTTGATTTGGACTGCCTTTTTGGGGGTGTAAAATGGAGATGTAGTCATCCATAAATCACACCCTCACCATGTCATGACTTTTTCTGGTGACCATAAACAAAACAGTAGGAGCGGACTGACTGGTACAATACAAAGATACATAGAGCACTGATACAAATAACTATTAACATGATTgggtaattttaatttaaaaatacaatctagTACAGATCCTCTCTAGTATGAATACACTGCTGAGATTTAAGGTTGCTTGCCTAACTGAAGTTTCTCCCCCACATGAGAGAGGTGGTGACGTTTAAGGTTTGATGCCTGACGGAAGCTCTTCCCACAATGAGAGCAGCTGTACGGTTTCTCCCCAGTGTGAATGCGCGTGTGATCTTTAAGGTTTGATTCCCGAGCGAAGCTCTTCTCACACAGGGTGCATTTGTATGGTTTCTCCCCCGTGTGACAGTGCTGGTGACGTCTAAGGTTTGTTACATGATTGAAGCCCTTCCCACACAGGGTGCAGCTGAAAGGtttcttctctgtgtgtgtgtactggtgAGATTTAAGGTGTTTTTTCAGAGAGAAGCTTGTCCCACACTTAGAGCAGCTGTAGGGTTTCtcccctgtgtgaatgcgctggtgagatttaaggCTCTCTGTGCTACTATAAATCTTTCCACACAGGGTGcagctgtacattttctgtcctgtgtgaatgcgctggtgtaaTTTAAAGTGATCTGCCCGACTGTatttcttcccacactgggtgcagctgtatggtttttctcctgtgtgaatgcgcttgTGAATTATCAGACTTCTTCCACgagtgaaactcttcccacacaggCTACAGGAGTGCACTCTTTTCCTTGTAggaatgcatttgtgtttttttaagcttgCAGAGTTCCTGTACGTTTTCTCACACTGAGGGCAGCGATGGCAGCCCTGATGTTTCCTAGTTGTGTTTGAGGGGGGAGAGTCAGAGCTGGAGGGTCCAGGACGCAGCTGTCTGCCCTGTGAAGATGGGCTCTCACCCCTCACTGTACTGTCACTGCCTCCGCTGAGCCCAGTCCTCAAGGCACCAGAGTCGCTGTCACACAGTCCATCTTCTGGAAGCTGTGGTTCCAGTTTACAGAGGCCTCCTGTAATATTGTCTAGTTTAAGATTACAGGGTTCATCTTTCAAACCTGTATGCATTTCCCCTCAAGGCACCAGAGTCGCTGTCACACAGTCCATCTTCTGGAAGCTGTGGTTCCAGTTTACAGAGGCCTCCTGTAATATTCTCTATTCTAAGATCACAGGGTTCATCTTTCACAACTGTATGCATTTCCCACTCCAGCTCTCTGTCCTCTGTCTTAATGTGAACAGACGCAACACTGGGCTCACACTGTGTACTGGTAGAGTCTGGCTcagcaccagctgcactgggtccacactcagatCCCAGTGCCCTGAGTCCCTGCGTTAAACCCACAGTCTGTGGTTCCACCATGTGGCCAGACTCCAGTCCACTGATCTCCATTTCACCATGTCTGCTCTCGTGCTGCTCAGACAGACTCTTGTTGTCGTCAgtagctgtgggctctgtgtcctgcctcagactggagccccACTCCTGCTCACAGGGATGCTGCCCAGTGGGagccctttccccagagtcagggagagcgctgGTCTCTATAG

Function

GO:

id name namespace
GO:0140110 transcription regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166266 True 2386 lncRNA 0.44 2 4109513 4111930

Neighbor

gene id symbol gene type direction distance location
AMCG00011777 NA coding upstream 134374 3970320 ~ 3975139 (+)
AMCG00011776 NA coding upstream 144330 3947402 ~ 3965183 (+)
AMCG00011774 NA coding upstream 186887 3919669 ~ 3922626 (+)
AMCG00011769 NA coding upstream 194611 3911900 ~ 3914902 (+)
AMCG00011761 mcm7,LOC107716516,LOC107744067 coding upstream 220455 3882625 ~ 3889058 (+)
AMCG00011782 NA coding downstream 52903 4164833 ~ 4172677 (+)
AMCG00011781 NA coding downstream 63505 4175435 ~ 4181132 (+)
AMCG00011785 NA coding downstream 131242 4243172 ~ 4249417 (+)
AMCG00011793 LOC105024602,LOC106563375,LOC105902387,LOC107564776 coding downstream 482030 4593960 ~ 4601353 (+)
AMCG00011794 NA coding downstream 534380 4646310 ~ 4648415 (+)
G132586 NA non-coding upstream 91757 4016127 ~ 4017756 (+)
G132573 NA non-coding upstream 113784 3990427 ~ 3995729 (+)
G132574 NA non-coding upstream 116609 3992264 ~ 3992904 (+)
G132518 NA non-coding upstream 268039 3841232 ~ 3841474 (+)
G132510 NA non-coding upstream 287200 3800311 ~ 3822313 (+)
G132655 NA non-coding downstream 106617 4218547 ~ 4218983 (+)
G132660 LOC105020582,LOC108229068,LOC104920020,LOC106608724 non-coding downstream 147614 4259544 ~ 4322290 (+)
G132722 NA non-coding downstream 640792 4752722 ~ 4752923 (+)
G132726 NA non-coding downstream 651759 4763689 ~ 4763888 (+)
G132734 NA non-coding downstream 663224 4775154 ~ 4775539 (+)
AMCG00011771 NA other upstream 131851 3903675 ~ 3977662 (+)
AMCG00011770 NA other upstream 211917 3892381 ~ 3897596 (+)
G132271 NA other upstream 904916 3201374 ~ 3204597 (+)
AMCG00011735 NA other upstream 1008376 3078417 ~ 3101137 (+)
G132221 NA other upstream 1104851 3001432 ~ 3004662 (+)
AMCG00011806 NA other downstream 1003160 5115090 ~ 5120098 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 1647928 5759858 ~ 5761248 (+)
G133059 NA other downstream 1716871 5828801 ~ 5829532 (+)
AMCG00011837 NA other downstream 1774987 5886917 ~ 5888884 (+)
AMCG00011853 zfhx2,LOC108245441 other downstream 1781594 5893524 ~ 5907174 (+)

Expression


Co-expression Network