G132833


Basic Information

Item Value
gene id G132833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5040983 ~ 5069667 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166545
CCTTTCTGAGGTGATGTGCAGAGCAAGTGTTTTAGTTTCATTTCCAGTGCCAGTGGACTGTCACCTTCCTCATCTTTTAGGCAGGCCTGCTGAGAGAgttgtttctttctctccacTTAGGGCATCTGTGAAATCACTGAGTGGAGCCAAGACATCCCGAACAGTTTCCAAAGTTGTCATGTTTGTGTCTCTGGGCATCAGGTGCCACTTCTTCCTGTCCTCAGCCAGAACAGCAGAGACTGCTTGTTGCTGCTCACAGAAGCCTTCCTCCATATCATAGgagctgtacAGGCCAGTGCTCTCCCTGACTCTGAGGAAAGAGCTCCCACTGAGCAGCAGCCCTGTGAGCAGGAGTggggctccagtctgaggcaggacacTGAAGATAAAGAGGGGCTaactgagcagcccaggagtaGAACCACTGAAGAGGAGCTCAGTGGCCTGGAGTCTGGCCACAGAGCAGAGCCACAGACTGAGGGTTTAGCACTGGGatctgagtgtggacccagtgcagctgATGCTGAGCTGGGCTTTGCTGGAACACAGCCTGAACCCAGTGTGGAGTCTGATCACATTAAAACAGAGTCCAATGAATCGGAGATAGACACTCACACTCTTCTGAAATATGGACTCTGTGATCCTAAACTGGAGAATATTACAGGAGGCCTCAGTGACCTGGAACCTGAGCTCCGTGTTCAGTGTGGAACCAAATCTGTTGCCTTGAAAACAGAGCTCAGTGCAGGGAGGGACCAATCGACACAGTGTAGACAGCTGCGTCCCAGACGCTCCAGCTCCCACACTCCCTCCAGCTCCCACACTCACCCCTCATGGGAAACTGTGAAACATCAGGGCTGCCAttgctgctcccagtgtgggaagaactTCAGTCAAGCAGGACGCCTTCAATCTCACCAGCGCGTTCATACGAAAAAGAAACCATACTTTTGCCGCCaatgtgggaagagtttctctcaGCGAGGAGACCATCAGAAACATCAGTGCATTCGCACAGGAAAGAAACCATACTGCTGTACCCATTGTGGGAGGAGCTTCAGCAATGTACGACACTTTGAATCTCACCAGCACATTCATACAGGAGAGAGGCCATACTGCTGcccccagtgtgggaagagcttcactcAGCAAGGAAACCTTAAAAAACATctgcgcattcacacaggagagaaaccatacagctGTACTCAGTGTGGGAAGAACTTCAGTGTGTTAGAAAACCTTAACAATCAtcagcacattcacacaggagagaaaccatacaagtgtacccagtgtgggaaggcTTTCACTCAGTCAGGAAGCCTTAAATATCACCAGCgtattcacacaggagagaaaccattcagctgctcccagtgtgggaagtgctTCACTTTGTTAGGAAATCTTCAatctcaccagcgcattcacacaggagagaaaccattcagctgctcccagtgtgggaggtgcttcactTTGTTAGGAAACCTTAAAACCCATCAGCGccttcacacaggagagaagccATTCTggtgctcccagtgtgggaagtgctTCACTCACTTGGCAAGCCTTAAACATCACcagtgcattcacacagaagagatcacacacaatacaatttaagaaaGGAGGAGGCGAGcctagaaatacaaaatgttacatttttaagcaGTCCTTTTTATGTTCAAAAGTTTAATCTGCTAATATAAAATTGTGTTGctgaagtgaaaatgaaaactgcatcATTACTAACGAAAACAACCTGACTCCCTGCCAACAACAAGGTGTACAATATGAGATTGAGAGTATCAGTCGTGACAATTCACTGGAATTGTGAATTTCATAGACTTACTTTCATCTGAATAATGAAACTGGTTTTGATGCAGAAGTTTtgcttctttcatttttatatttaaacacgAGTTTTGGAACTTcaagacatgcatttttttaaatacatagtaCAGCTTGTGGCAAATTTAACCTAAACTGAAGGGCAATATAAGGTCTTGATTGTAAATGTACGAGGGCTCTTCAAGCTATTAGCATATGCAAGTCAGGTTGCGCTCCTAAAACCCACGGTGTGTAACAATGAGAGGGGAGCTGACTTCCTGTTCCGGGTGATTGATTCATTTTGTGTTGGGTTGTTGCGGGAAAGAGACTTGCTGAACTGTTCCTGCTTATTGAACGCACTCCACGCTCAAGGCAGAAAGAGACATTGCTGCACTGCTGCACGTTTAAGGCGGAAGGAGAGATTGCTGTACAGTTTCTGTGTACTGAAGGTGTTCCATGCTCAAGGCTTTAATCTTCAGCCTGGCTTAGCTGACTTTGTACTCTTATGTTACACTGTATGCTTTAGACCCTGCTTCAGGATTCACACGATGAATCGGAATGTATATGCAGAAATGGACGGGAgtgatttgtttccttttgctgtttagtttcttatttgaatgtgttttgttttcttactttgtttgtttattatttcaactATGTAATGTGTTTTGGGCTATAAAGACCTGCCGTAGTGGAAATGAATGCACATGCACAGCAAAGTAAAGTCTGACTCCACTATAATATGCAATagattgtgatttatttatgtactagGCATAACCTACCTGGCGCCCAAACAACATTGTTTATAAATACGCCGCCACAAGCTTATTGatgttttacattatgaaaGTCTTATTACAAccattgtgaaataatttagaATTTATTGAAGGctgtactgtaattattattttacatatcacAGCTCTGGCAACATTTATATTTGGTTTTCATCGTATGATTTAATTTgctgaaaattgtgttttcattatacatttaatgtgtgcTAACTATAGAAATGAACGAAAATGATGATCCTCCTTCTTTAACCTAAGAgttttaaaaaaacaggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166545 True 2922 lncRNA 0.44 3 5040983 5069667

Neighbor

gene id symbol gene type direction distance location
AMCG00011802 NA coding downstream 233294 4805890 ~ 4807689 (-)
AMCG00011797 NA coding downstream 260493 4778329 ~ 4780490 (-)
AMCG00011798 NA coding downstream 271179 4766530 ~ 4769804 (-)
AMCG00011800 NA coding downstream 295447 4745240 ~ 4745536 (-)
AMCG00011799 NA coding downstream 309522 4721755 ~ 4731461 (-)
AMCG00011809 NA coding upstream 57938 5127605 ~ 5133544 (-)
AMCG00011810 NA coding upstream 96501 5166168 ~ 5219056 (-)
AMCG00011818 NA coding upstream 291670 5361337 ~ 5399035 (-)
AMCG00011822 NA coding upstream 332978 5402645 ~ 5460948 (-)
AMCG00011821 NA coding upstream 458616 5528283 ~ 5529716 (-)
G132819 NA non-coding downstream 21560 5018963 ~ 5019423 (-)
G132759 NA non-coding downstream 189981 4850720 ~ 4851002 (-)
G132747 NA non-coding downstream 229125 4811547 ~ 4811858 (-)
G132717 nlgn2,LOC107386614,LOC106563375 non-coding downstream 346178 4694438 ~ 4694805 (-)
G132716 LOC102778775,LOC103391145 non-coding downstream 347741 4692750 ~ 4693242 (-)
G132862 NA non-coding upstream 92518 5162185 ~ 5163811 (-)
G132977 NA non-coding upstream 561427 5631094 ~ 5631526 (-)
G133076 NA non-coding upstream 784270 5853937 ~ 5854156 (-)
G133080 NA non-coding upstream 786996 5856663 ~ 5857165 (-)
G133147 NA non-coding upstream 827072 5896739 ~ 5897003 (-)
G132788 NA other downstream 36374 5004165 ~ 5004609 (-)
G132712 LOC105024602,LOC106563375,LOC105902387,LOC107564776 other downstream 446534 4593693 ~ 4594449 (-)
AMCG00011792 NA other downstream 548426 4482151 ~ 4492557 (-)
G132693 NA other downstream 564004 4474605 ~ 4476979 (-)
G132667 NA other downstream 822000 4218549 ~ 4218983 (-)
AMCG00011811 NA other upstream 72798 5142465 ~ 5150213 (-)
AMCG00011812 NA other upstream 220507 5290174 ~ 5328724 (-)
G133026 NA other upstream 631419 5701086 ~ 5703917 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other upstream 637616 5707283 ~ 5793845 (-)
AMCG00011831 smyhc2,LOC107560354,LOC108436074,LOC108436073,LOC102297239,LOC102201055,LOC101483728,LOC103396567 other upstream 637726 5707393 ~ 5720981 (-)

Expression


Co-expression Network