G132862


Basic Information

Item Value
gene id G132862
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5162185 ~ 5163811 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166578
CCCCAGAATAATGCAGGGCAGCAGGAATCCCATCACAATGGTGCCGATCTTAAACTTGGCGTACCTGCTGCTGACAGGATACTGCTCCAGACAATGTCTTTGATTGGGATCGTACACGGAGGGATAGAGTCCGCTCAGGCAGAAGAGGAAGATCACCACCCACACCCCCAGGCTGACGACCAGAGCCAACTTGACGGTCCGGAATCTCCTGCTCCTCAGCGGGTGGACGATGGCGAGGTAGCGGTCCAGCGCGATCAGGCAGAGGAAGACGATGCTCGCGTATAGGTTGATGTAGAAGAGGTACCCGACAAAGTCACAGATGGTGTCCCCATACGTCCACATGTGGTTCTTCTTCAGGTAGATGATCCACAGCGGCAGGGTGAGGATCTGCAGAAGATCGGACACCAGCAGGTTGAGGATGAAGATGGGCATGGTGTTGCCAGCGCGTAGGAGTTGGTAGAGCCCCCACAGCGAGAGCAGGTTAGCAGGCAGCGCCAGTACAAAGGTGACACTGTAGATGGACATGAGTCCCAACTGGTCACTGGTCAAGTTGAAGGAACAGTTCATATTTGTCACCCCCATCTTGTGGATTATGAGAATCGGGTGCAAGTGTGGTCATGAAAGGAAGGTCCTGATATACGTGGTCTGTTTTCTTTGCCTGTTTTTAGTCTTCTGCTAATAAAGGATCTACTAGGCAAGTTCTGTGTTTCTAAACATCAACTGAAAGACACCTCAGAGGCCAAATAGTGTGGAAACGTTTGTTCCAGGAAAACCACATGGTGACGTGATCATGGTTCTTATATTATGAATAGCAGCCATTCAGCAGATCCATTCAAATAATCCCATCATTCAGAAAAGCTCCTCTGTCACTGCTGTGGTCTGCTTATGGGCAATTACAACTCAGTCGACCATGTGGGGGACTTTTTTTAAGCTACAAGTTCATGGCTGCATGACCTTTCTTTGCTCACATCCCTGAAGACTCTAAATGTTGAGACACATAAGCAGAACAATGGTAATTAATAACTAAAGTACCTTCCATGCAATTTGTAAAGAGTATTTGCTAAAATATTACCCcttttcagtcattttattgtcattattgattgatttgaaagaCTGACACATCTCTccaaaacaacatacatttgtacccattcatgcttttttgttttgttttgacgtAAGGAATCTGGGTAAGGTTCATTGCCCAAGGCTTCAACACCAGCGGTTCATGGTTATAAGTCCTTTTGTTGCATTAATTCTGTATAATGCATATGATTCTCTGATTTCTGATAGTCAAtcaaagtttttaatatatgcaCATTAAATTAGAGAGACGAAAAATCAAATGATCAGGATCATAACTTTCAATTCACCTCTAATTCCCATTGTATTCTCACATAGGGTTTAGTTCACATTTGCTTTTGAATGCAGGATTTTGGTAAAACACATTAATCAAAGTAACTGACACTGTGTATTTTAGTGTctgctgttttcattataatttagtttggaACAATATGCGGGGTCCTGCATAGGATTGCCAGATCCATTTAAtctttaaactaaaaaaaacatcacagtgaAAATTGAGGATTAAGTATTTCCTGTAATTATACTGTTATAG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
TU166578 True 1627 lncRNA 0.43 1 5162185 5163811

Neighbor

gene id symbol gene type direction distance location
AMCG00011809 NA coding downstream 28641 5127605 ~ 5133544 (-)
AMCG00011802 NA coding downstream 354496 4805890 ~ 4807689 (-)
AMCG00011797 NA coding downstream 381695 4778329 ~ 4780490 (-)
AMCG00011798 NA coding downstream 392381 4766530 ~ 4769804 (-)
AMCG00011800 NA coding downstream 416649 4745240 ~ 4745536 (-)
AMCG00011810 NA coding upstream 2357 5166168 ~ 5219056 (-)
AMCG00011818 NA coding upstream 197526 5361337 ~ 5399035 (-)
AMCG00011822 NA coding upstream 238834 5402645 ~ 5460948 (-)
AMCG00011821 NA coding upstream 364472 5528283 ~ 5529716 (-)
AMCG00011827 NA coding upstream 472310 5636121 ~ 5638116 (-)
G132833 NA non-coding downstream 92518 5040983 ~ 5069667 (-)
G132819 NA non-coding downstream 142762 5018963 ~ 5019423 (-)
G132759 NA non-coding downstream 311183 4850720 ~ 4851002 (-)
G132747 NA non-coding downstream 350327 4811547 ~ 4811858 (-)
G132717 nlgn2,LOC107386614,LOC106563375 non-coding downstream 467380 4694438 ~ 4694805 (-)
G132977 NA non-coding upstream 467283 5631094 ~ 5631526 (-)
G133076 NA non-coding upstream 690126 5853937 ~ 5854156 (-)
G133080 NA non-coding upstream 692852 5856663 ~ 5857165 (-)
G133147 NA non-coding upstream 732928 5896739 ~ 5897003 (-)
G133156 NA non-coding upstream 761818 5925629 ~ 5973380 (-)
AMCG00011811 NA other downstream 11972 5142465 ~ 5150213 (-)
G132788 NA other downstream 157576 5004165 ~ 5004609 (-)
G132712 LOC105024602,LOC106563375,LOC105902387,LOC107564776 other downstream 567736 4593693 ~ 4594449 (-)
AMCG00011792 NA other downstream 669628 4482151 ~ 4492557 (-)
G132693 NA other downstream 685206 4474605 ~ 4476979 (-)
AMCG00011812 NA other upstream 126363 5290174 ~ 5328724 (-)
G133026 NA other upstream 537275 5701086 ~ 5703917 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other upstream 543472 5707283 ~ 5793845 (-)
AMCG00011831 smyhc2,LOC107560354,LOC108436074,LOC108436073,LOC102297239,LOC102201055,LOC101483728,LOC103396567 other upstream 543582 5707393 ~ 5720981 (-)
AMCG00011845 LOC107680223,LOC107589804,LOC107688458,LOC107722552,LOC107088600,LOC103479335,LOC102208621,LOC105941235,LOC103147024,LOC108229072,LOC106514905,LOC107384191,LOC106590239 other upstream 577402 5741213 ~ 5760549 (-)

Expression


Co-expression Network