G132977


Basic Information

Item Value
gene id G132977
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5631094 ~ 5631526 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166732
TCTTTTGTGCATCTGCAATGgcttcctttattttctgtattatttgtttcagCTGTTTCTCTTCCAATTCCACAATGCTGTTTTCTGTTGAAAAGTGCTCTGTGATTTTTCCAAAGATCCATTTCTTCACAAAATCTTCATAGGACTGAATATACTTCACATAGTTTTCAAACTTTTCTTCTGAAAGCAGCTGTTTCAGAACGGAGAACTGGAAAAATGACCGGGTGCTATAATCTACAGAGCTCTTTCCCGTCAGCATTTCATCCACAATATCTGGACCCAAGCATTTGGTGACATACGCCCTTACTGCAGGTCTAAGGCAGAGTTGAGTAAACTCTTCAGCTTTCTTCTGGCACTGGTCTCTTTCATGGAATAGATCCTTGACATTTGCCATTATAAGTTTTTTTAAGAAGCACCATGGAAGAGATTTCAG

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166732 True 433 lncRNA 0.39 1 5631094 5631526

Neighbor

gene id symbol gene type direction distance location
AMCG00011821 NA coding downstream 101378 5528283 ~ 5529716 (-)
AMCG00011822 NA coding downstream 170146 5402645 ~ 5460948 (-)
AMCG00011818 NA coding downstream 232059 5361337 ~ 5399035 (-)
AMCG00011810 NA coding downstream 412038 5166168 ~ 5219056 (-)
AMCG00011809 NA coding downstream 497550 5127605 ~ 5133544 (-)
AMCG00011827 NA coding upstream 4595 5636121 ~ 5638116 (-)
AMCG00011825 NA coding upstream 12187 5643713 ~ 5646448 (-)
AMCG00011832 NA coding upstream 27263 5658789 ~ 5680606 (-)
AMCG00011833 NA coding upstream 60528 5692054 ~ 5696144 (-)
AMCG00011843 LOC108436074,LOC108436073 coding upstream 103503 5735029 ~ 5740052 (-)
G132862 NA non-coding downstream 467283 5162185 ~ 5163811 (-)
G132833 NA non-coding downstream 561427 5040983 ~ 5069667 (-)
G132819 NA non-coding downstream 611671 5018963 ~ 5019423 (-)
G132759 NA non-coding downstream 780092 4850720 ~ 4851002 (-)
G132747 NA non-coding downstream 819236 4811547 ~ 4811858 (-)
G133076 NA non-coding upstream 222411 5853937 ~ 5854156 (-)
G133080 NA non-coding upstream 225137 5856663 ~ 5857165 (-)
G133147 NA non-coding upstream 265213 5896739 ~ 5897003 (-)
G133156 NA non-coding upstream 294103 5925629 ~ 5973380 (-)
G133180 NA non-coding upstream 357588 5989114 ~ 5990502 (-)
AMCG00011812 NA other downstream 302370 5290174 ~ 5328724 (-)
AMCG00011811 NA other downstream 480881 5142465 ~ 5150213 (-)
G132788 NA other downstream 626485 5004165 ~ 5004609 (-)
G132712 LOC105024602,LOC106563375,LOC105902387,LOC107564776 other downstream 1036645 4593693 ~ 4594449 (-)
AMCG00011792 NA other downstream 1138537 4482151 ~ 4492557 (-)
G133026 NA other upstream 69560 5701086 ~ 5703917 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other upstream 75757 5707283 ~ 5793845 (-)
AMCG00011831 smyhc2,LOC107560354,LOC108436074,LOC108436073,LOC102297239,LOC102201055,LOC101483728,LOC103396567 other upstream 75867 5707393 ~ 5720981 (-)
AMCG00011845 LOC107680223,LOC107589804,LOC107688458,LOC107722552,LOC107088600,LOC103479335,LOC102208621,LOC105941235,LOC103147024,LOC108229072,LOC106514905,LOC107384191,LOC106590239 other upstream 109687 5741213 ~ 5760549 (-)
G133075 NA other upstream 220354 5851880 ~ 5852590 (-)

Expression


Co-expression Network