G133181


Basic Information

Item Value
gene id G133181
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5992314 ~ 6035898 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU167009
tttttaattgtgtattattcCAGTGAGCTGCAGTAcccctgctgtgctgtgagGGGCAcagtctcactctctctcactgcattattaatattaacactTCTGTCTGGGTGTCCGTCTAGCACTTGTGAAGAACGGAACCGCGGAACCCGGTCGCCATGGCAACcgtcgggggtggggggggcatgaTGTCACAGCTGCCGTTGCCATGCTGACGGAGAATCGGCTTATCCCTGTTTAAACAGAGAGGGGGTGAGATTGAAGTTAATCAGGGAGAATGGTAACGAAGGCCGACACTGATCtgtacagtgagagagagagagagagagaNggggggggggggggagagaga

Function

GO:

id name namespace
GO:0008190 eukaryotic initiation factor 4E binding molecular_function
GO:0031369 translation initiation factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167009 True 349 lncRNA 0.53 2 5992314 6035898

Neighbor

gene id symbol gene type direction distance location
AMCG00011857 NA coding downstream 5353 5981093 ~ 5986961 (-)
AMCG00011859 NA coding downstream 45394 5940650 ~ 5946920 (-)
AMCG00011856 NA coding downstream 53121 5936640 ~ 5939193 (-)
AMCG00011858 NA coding downstream 99234 5889044 ~ 5893080 (-)
AMCG00011841 NA coding downstream 145782 5844281 ~ 5846532 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding upstream 18186 6054084 ~ 6057440 (-)
AMCG00011870 LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911 coding upstream 21595 6057493 ~ 6063479 (-)
AMCG00011869 prmt5,LOC107668985,LOC102797577 coding upstream 32250 6068148 ~ 6077058 (-)
AMCG00011885 NA coding upstream 77676 6113574 ~ 6123209 (-)
AMCG00011887 NA coding upstream 90699 6126597 ~ 6137761 (-)
G133180 NA non-coding downstream 1812 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 18934 5925629 ~ 5973380 (-)
G133147 NA non-coding downstream 95311 5896739 ~ 5897003 (-)
G133080 NA non-coding downstream 135149 5856663 ~ 5857165 (-)
G133076 NA non-coding downstream 138158 5853937 ~ 5854156 (-)
G133209 NA non-coding upstream 43948 6079846 ~ 6080079 (-)
G133277 NA non-coding upstream 235289 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 320567 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 602349 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 654110 6690008 ~ 6692129 (-)
AMCG00011860 NA other downstream 34389 5954630 ~ 5957925 (-)
AMCG00011842 NA other downstream 120314 5860396 ~ 5872000 (-)
G133075 NA other downstream 139724 5851880 ~ 5852590 (-)
AMCG00011845 LOC107680223,LOC107589804,LOC107688458,LOC107722552,LOC107088600,LOC103479335,LOC102208621,LOC105941235,LOC103147024,LOC108229072,LOC106514905,LOC107384191,LOC106590239 other downstream 231765 5741213 ~ 5760549 (-)
AMCG00011831 smyhc2,LOC107560354,LOC108436074,LOC108436073,LOC102297239,LOC102201055,LOC101483728,LOC103396567 other downstream 271333 5707393 ~ 5720981 (-)
AMCG00011867 NA other upstream 21 6035919 ~ 6040630 (-)
G133208 NA other upstream 42472 6078370 ~ 6079367 (-)
AMCG00011886 NA other upstream 189622 6225520 ~ 6227193 (-)
AMCG00011882 NA other upstream 195260 6231158 ~ 6233113 (-)
AMCG00011884 NA other upstream 216048 6251946 ~ 6254840 (-)

Expression


Co-expression Network