G133480


Basic Information

Item Value
gene id G133480
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6690008 ~ 6692129 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU167425
GAGGACAGCAATCTCAAAACACGTGGCTCTGCTCTGTCGCCTTGCGTCCAGCTCCTCGCTTTGCAATTGGGAAAAGAGACGGAGAGACATCGACGCCGAACTGCTTCACATTAAACATATTGTTAAAAGTCTTATTTCTGCTTGTGTTTGGACTCGAGGGAAGCGCCGCcatgtttttgcagttttaccTGAACGAGAATGGGGACAGAGTTTACACGCTGAAGAAGCTGGACCTGACAGGTCAGCCCACCAGCTCGGCCCACCCGGCCCGGTTCTCCCCGGATGATAAGTTCTCCCGGCACCGGGTCACCGTCAAGAAGCGCTTCGGACTCCTGCTCACCCAGCAGCCCCGGCCCGTCCTGTAGCATGGCCTGGCTCTGACCCGACCTGAAATCATCCGCACTGTCTCCTGGACTCACAGCCCATTCCGGCCCAGTTCTGACACCAACACGGACTTACTGTAAAATGGCAACCTCAACTTTGTGTCACCCAGCTACaccaataacacacacacagcagtcgGTGTACTAGCTGTGTTCAGTGGGATCACACTGCTGCCATTTTGTGTACAgtctctgtttatttttaattttttgagtTGTTGTACTGTTTGCATTGTACAGATTCCTGTGTCATTGTCACCTGTGGATCTGCAGcaataaatgtgtttctggAACTTGGCCTTGATCTCTG

Function

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU167425 True 693 lncRNA 0.51 2 6690008 6692129

Neighbor

gene id symbol gene type direction distance location
AMCG00011926 slc12a6 coding downstream 486 6676690 ~ 6689522 (-)
AMCG00011921 NA coding downstream 13999 6674839 ~ 6676009 (-)
AMCG00011919 NA coding downstream 15589 6665955 ~ 6674419 (-)
AMCG00011918 supt16h,LOC106577942,LOC106608973 coding downstream 25821 6653124 ~ 6664187 (-)
AMCG00011914 NA coding downstream 113676 6574867 ~ 6576332 (-)
AMCG00011929 NA coding upstream 14979 6707108 ~ 6712306 (-)
AMCG00011925 NA coding upstream 23793 6715922 ~ 6732295 (-)
AMCG00011930 NA coding upstream 49249 6741378 ~ 6747286 (-)
AMCG00011927 LOC101472004 coding upstream 57992 6750121 ~ 6760140 (-)
AMCG00011931 NA coding upstream 80371 6772500 ~ 6774582 (-)
G133417 NA non-coding downstream 51416 6638247 ~ 6638592 (-)
G133286 NA non-coding downstream 329128 6356465 ~ 6360880 (-)
G133277 NA non-coding downstream 342295 6271187 ~ 6347713 (-)
G133209 NA non-coding downstream 609929 6079846 ~ 6080079 (-)
G133181 NA non-coding downstream 654110 5992314 ~ 6035898 (-)
G133529 NA non-coding upstream 135853 6827982 ~ 6828221 (-)
G133547 NA non-coding upstream 164092 6856221 ~ 6856699 (-)
G133571 NA non-coding upstream 278164 6970293 ~ 6970708 (-)
G133591 NA non-coding upstream 374284 7066413 ~ 7066672 (-)
G133607 NA non-coding upstream 443739 7135868 ~ 7137524 (-)
AMCG00011920 NA other downstream 58206 6607329 ~ 6631802 (-)
G133393 NA other downstream 141113 6530697 ~ 6548895 (-)
AMCG00011916 LOC107706350,LOC107738137,LOC107706351,LOC107668963 other downstream 144253 6539961 ~ 6545755 (-)
AMCG00011913 acin1,LOC106608850,LOC103475989,LOC102237119,LOC106918835,LOC107377177,LOC107591382 other downstream 152248 6465270 ~ 6537760 (-)
AMCG00011903 NA other downstream 286852 6395012 ~ 6403156 (-)
AMCG00011928 NA other upstream 68278 6760407 ~ 6770294 (-)
G133526 NA other upstream 132135 6824264 ~ 6824588 (-)
AMCG00011941 NA other upstream 200530 6892659 ~ 6897827 (-)
AMCG00011957 NA other upstream 522108 7214237 ~ 7240360 (-)
G133712 NA other upstream 794540 7486669 ~ 7549652 (-)

Expression


Co-expression Network